Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1068 ATGAGAGAAAAGTGGAGAGCATTGGATTGGTCTGATGGGTGTGCTCGGAGAATAAATCTGAGTTGTAGCAATGGAGATGGGTTCGTTAAGTATGAAGGAATGAGATTGCCAGACACATCTTCCTCCTGGTTTGACACAAGCATGAgccttgatgaatgtaagagaGTGTGTTCGAAAAACTGCTCTTGCACAGCATACACAAGTTTAGATGTCAGAGATGGTGGGAGTGGTTGCTTGCTTTGGTTTGGTAACATTCTGGATATGGGAAAACATGTCTCCCCAGGACAAGATATTTACATAAGGATGGCTGCTTCAGAGAtagATCatatttggcataaaaagcacATTAACAAGAAGCTTGTGGTGATTTTGACAGCAATTACTACGCTCATCATAGGCGTAATATTAGGATCAGTCATATACATACGGAGAAAACTTGAGAAACCAGGAGAGACAAATATAATCAACCGGATGCATCACACTATAAAACATGAGAAGAAAGACATTTACTTACCAACCCTTGATTTATCAATCATTGCTAATGCCACTAGTAACTTCTCTGCTAGTAACATACTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTGCGCTGGCAAATGGACAAGAGGTTGCTGTTAAGCGGCTTTCCAAAAATTCTGGACAAGGATTAGATGAGTTCAGAAATGAAGTTGTGTTGATTGCCAATCTTCAGCACCGGAATCTTGTAAAGATTCTTGGGTGTTGTATTCAAGATGATGAGAGAATCTTGATCTATGAATTCATGCCTAACAGGAGCTTGGATCTTTACATTTTTGATCaaacaagaaagaaattattGGACTGGAACAAACGATTCCAAGTTATAAGCGGGATTGCTAGAGGGCTTCTCTATCTTCATCATGATTCTAGACTAAGGATCATCCACAGAGATATCAAAACCAGCAATATTCTTCTTGATAATGATATGAATCCAAAGATATCAGACTTCGGACTAGCAAGGATGCTTGTTGGTGATCACACTAAAGCCAATACTAAAAGAGTAGTGGGAACTCATGGCTACATGCCTCCTGAGTATGCAGTGTATGGATCTTTTCAGTGA 1101 0.3824 MREKWRALDWSDGCARRINLSCSNGDGFVKYEGMRLPDTSSSWFDTSMSLDECKRVCSKNCSCTAYTSLDVRDGGSGCLLWFGNILDMGKHVSPGQDIYIRMAASEIDHIWHKKHINKKLVVILTAITTLIIGVILGSVIYIRRKLEKPGETNIINRMHHTIKHEKKDIYLPTLDLSIIANATSNFSASNILGEGGFGPVYKGALANGQEVAVKRLSKNSGQGLDEFRNEVVLIANLQHRNLVKILGCCIQDDERILIYEFMPNRSLDLYIFDQTRKKLLDWNKRFQVISGIARGLLYLHHDSRLRIIHRDIKTSNILLDNDMNPKISDFGLARMLVGDHTKANTKRVVGTHGYMPPEYAVYGSFQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1068 366 SMART ntp_6 23 102 IPR003609 -
Ssu8g1068 366 ProSiteProfiles Protein kinase domain profile. 186 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1068 366 Pfam PAN-like domain 22 88 IPR003609 -
Ssu8g1068 366 CDD PAN_AP_plant 19 103 - -
Ssu8g1068 366 ProSiteProfiles PAN/Apple domain profile. 22 103 IPR003609 -
Ssu8g1068 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Ssu8g1068 366 Gene3D Hepatocyte Growth Factor 19 100 - -
Ssu8g1068 366 Pfam Protein kinase domain 188 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1068 366 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-1 6 365 - -
Ssu8g1068 366 SUPERFAMILY Hairpin loop containing domain-like 26 96 - -
Ssu8g1068 366 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 365 - -
Ssu8g1068 366 Gene3D Transferase(Phosphotransferase) domain 1 262 366 - -
Ssu8g1068 366 SMART serkin_6 186 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1068 366 SUPERFAMILY Protein kinase-like (PK-like) 167 363 IPR011009 -
Ssu8g1068 366 Gene3D Phosphorylase Kinase; domain 1 157 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1068 Ssu-Chr8 18632935 18634771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1068 120 363 Receptor kinase-like Gene Family AT4G04570 53.878 1.33e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1068 Pkinase 9.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1068 - - ccaj:109805721 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1068 8 18632935 18634771 Ssu8g1068 8 18632935 18634771 ECH