Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1066 ATGGAAGGTTTTACCTTGCTTCTGTTCTGCCTTGCCATGCTGAATAATATAGCAGCCACCACTGTCAGAGATACTATTAATACAGTGCAGTCTATCAGTGATGGCCAGATCATAGTTTCAGCTGGAGAAATCTTTGCGTTGGGATTCTTCAGTCCAGGCAATTCAAAAAACCGTTATGTTGGAATTTGGTACTATAAAATCCCAATAAAGACTGTAGTATGGGTTGCCAACAGAGACAACCCTCTTCCAGACTCATCAGGGGTCTTGAAGCTCGATGACACTGGAGTTCTAGTCCTTTTCAACCATAACAAGAGTGTCATCTGGTCTTCCAACTCAACAAGGAAAACACAGTATCCGGTTGCAAAATTAATGGATTCTGGAAATTTCGTTGTGCAGGAAAGCGGCAACAATGACCCAAAAGATTTACTGTGGCAAAGTTTTGATTATCCGGTAGACACAGTCTTGCCAGGACAGAAGCTTGGAAAAAATCTAGTTACAGGCCTGAATTGGTACCTTTCATCATGGAATAGTCCTGATGATCCATCTCaaggtatatataatattctagTTGATACTGGTGGATATGCACAATATGTTTTGAGAAAAGGCACTGTCAAAATATTTCGTTTTGGAGCATGGAATGGTATTCACTCTAGTGGGTCACCTCAGGTGAAACAAAATAGTGAATTAggatttaattatgtttctaatgagGAAGagatatatattacatattatctTATCAACAAGTCATCTCCCTTCAGGATGGTGTTAGCAACAGAAGGAATTCTCAGGGGGATTTATTGGAGTGATGAAGAAAATGGTTGGAAAGAGTTTGGAAAAGCTCCCGTGGATGACTGTGATTACTATGAAAAATGTGGAGCATATGCTAGCTGTAATGTAAACAATGTCCCTCCATGTGATTGCTTGGATGGATTTGTACACAAAACGGCACATATAAATGCTGTTTGTGTGAGGAGAACTTCACTGAGTTGCCATGGAGATGGGTTTTTGAAGTTTTCAGGGTTGAAATTACCAGACACAGAGAGATCCTGGTATGATAGAAATATTAGCCACGAGGATTGTAGGACATTGTGCATGAAGAATTGCTCCTGTACAGCTTATGCAGCCTTGGATATCAGTAAAGGGGCAAGTGGGTGTTTACTCTGGTTTAATGATCTGACTGACATAGAAGAATTCCCTGAAGTTAATCAAGATATATACATAAGGATGGCTAGGACAGAAGTAGGAGAAAGAGATgcaaatgtaataaatgagcACGAGAAGGAAGATCTGGAGTTACCTACGTTTGATTTGTCAACAATTAGTTCTGTTACCAATAACTTTTCACCTGACAACAAACTAGGGCAAGGTGGTTTTGGATCAGTTTACAAGGGCATCCTGGATGATGGAAGAGAAATAGCTGTCAAGAGGCTCTCAAAGAATTCGAGACAAGGACTTCAAGAGTTCAAAAATGAAGTTATACATATTGCAAAACTTCAGCACAGGAATTTAGTGAGGCTACTAGGTTACTGCATTCAAGCAGGAGAAAGATTGCTTGTCTATGAATTTATGCCCAACAAAAGCTTGGATTCCTTCATATTTGGTTTGTTTCCAAAGAAACcttattcattatttaattcatttggaATTATATTCTGTTGA 1665 0.3748 MEGFTLLLFCLAMLNNIAATTVRDTINTVQSISDGQIIVSAGEIFALGFFSPGNSKNRYVGIWYYKIPIKTVVWVANRDNPLPDSSGVLKLDDTGVLVLFNHNKSVIWSSNSTRKTQYPVAKLMDSGNFVVQESGNNDPKDLLWQSFDYPVDTVLPGQKLGKNLVTGLNWYLSSWNSPDDPSQGIYNILVDTGGYAQYVLRKGTVKIFRFGAWNGIHSSGSPQVKQNSELGFNYVSNEEEIYITYYLINKSSPFRMVLATEGILRGIYWSDEENGWKEFGKAPVDDCDYYEKCGAYASCNVNNVPPCDCLDGFVHKTAHINAVCVRRTSLSCHGDGFLKFSGLKLPDTERSWYDRNISHEDCRTLCMKNCSCTAYAALDISKGASGCLLWFNDLTDIEEFPEVNQDIYIRMARTEVGERDANVINEHEKEDLELPTFDLSTISSVTNNFSPDNKLGQGGFGSVYKGILDDGREIAVKRLSKNSRQGLQEFKNEVIHIAKLQHRNLVRLLGYCIQAGERLLVYEFMPNKSLDSFIFGLFPKKPYSLFNSFGIIFC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1066 554 PANTHER - 422 537 - -
Ssu8g1066 554 SMART ntp_6 332 411 IPR003609 -
Ssu8g1066 554 Pfam Protein tyrosine and serine/threonine kinase 452 534 IPR001245 GO:0004672|GO:0006468
Ssu8g1066 554 Gene3D Phosphorylase Kinase; domain 1 423 524 - -
Ssu8g1066 554 ProSiteProfiles PAN/Apple domain profile. 332 412 IPR003609 -
Ssu8g1066 554 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Ssu8g1066 554 SUPERFAMILY Protein kinase-like (PK-like) 432 539 IPR011009 -
Ssu8g1066 554 PANTHER - 12 416 - -
Ssu8g1066 554 SMART blect_4 29 150 IPR001480 -
Ssu8g1066 554 CDD PAN_AP_plant 328 412 - -
Ssu8g1066 554 Gene3D Hepatocyte Growth Factor 329 409 - -
Ssu8g1066 554 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Ssu8g1066 554 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 416 - -
Ssu8g1066 554 CDD B_lectin 29 150 IPR001480 -
Ssu8g1066 554 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Ssu8g1066 554 ProSitePatterns Protein kinases ATP-binding region signature. 455 477 IPR017441 GO:0005524
Ssu8g1066 554 ProSiteProfiles Protein kinase domain profile. 449 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1066 554 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 422 537 - -
Ssu8g1066 554 Pfam PAN-like domain 332 397 IPR003609 -
Ssu8g1066 554 Pfam D-mannose binding lectin 71 175 IPR001480 -
Ssu8g1066 554 Gene3D - 18 147 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1066 Ssu-Chr8 18557014 18559885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1066 418 535 Receptor kinase-like Gene Family AT4G38830 60.000 2.32e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1066 S_locus_glycop 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1066 - - gmx:100795006 772.311