Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1064 ATGGAAGGCTATACCTTGCTTCTGCTCTGCCTTGCCTTGCTGAATAATGCAGCAACCGCCACTGTGAGAGAAACTATTAATACAATACAACCCATCAATGATGGCCAGATCATAGTTTCACCCGGAAAAACTTTTGCACTGGGATTCTTCAGTCCAGGCAATTCCAAGAACCGTTATGTGGGAATTTGGTATAATAAGATCCTAACACAGACTGTAGTATGGGTTGCCAACAGAGACAACCCCCTCATTGATTCATCAGGGGTTTTAAAGCTCAATGAAACTGGAGTCctagtccttctcaaccataaCAAGAGTGTCATCTGGTCTTCCAACACAACAAGGTCAGCGCGGTACCCGGTTGCAAAGCTTTTGGATTCTGGAAATCTCATTGTGCAGGATGGCAACGACAATAATGACCCAAAAGATTTACTGTGGCAAAGTTTTGATTATCCAGTGGACACAATCTTGCCAGGACAGAAGTTTGGAAGAAATCTAATTACGGGCCTGAATCGATACCTGTCGTCGTGGAATAGCTCTGAGGATCCATCTCAAGGTGAATATAGTTATCAAATTGATATTAGTGGATATCCACAGTTCGTTTTAAGAGAAGGCACTTTGAAAATATATCGTTTTGGATCATGGAATGGTATTCAGTTTAGTGGGGCACCTCAGTTGAAACAAAATGCTGTTACTAGATTTAGTTTTATTTCTGATGAGGAAGAGTTGTATTTTAGATTTGAGCTTACCAACAAGTCAGTTATTCATAGGATGGTGTTAACAACAGATGGATATCTCCTGGGAATTTATTGGAATAATGAAGGAAAAGTTTGGAGCTTGCATGGACGAATTCCTGTGGATGACTGTGATTACTACGACAAATGTGGAGCCTATGCTAGCTGTAATATAAACAACATCCCCCCATGTAATTGCTTGGATGGATTTGTTCCCAAAACGGCTGATATATATAGTGGTTGTGTAAGGAGAACTTCACTGAGTTGTCATGGAGACAGGTTTTTGAAGTTTTCAGGGTTAAAATTACCAGACACAGAGAGATCCTGGTTTGACAGAAATATTAGCCTAGAGGATTGTAGGATATTATGCATGAAGAATTGCTCCTGTACAGCTTATGCAGCCTTGGATGTCAGTAAAGGGCCAACTGGGTGTTTACTCTGGTTTAATGATCTGATTGACATGAGAGAATCGACTGAAGTTAATGAAGATATATACATAAGGATGGCTGGGACAGAAATAGGGGTTAAAGACCCATCTGTTTTGAGCAGTCCTCAATCAGCAGTCCATAACCCTTCAAGTGTCAAGCCTTTTCACTGA 1329 0.4018 MEGYTLLLLCLALLNNAATATVRETINTIQPINDGQIIVSPGKTFALGFFSPGNSKNRYVGIWYNKILTQTVVWVANRDNPLIDSSGVLKLNETGVLVLLNHNKSVIWSSNTTRSARYPVAKLLDSGNLIVQDGNDNNDPKDLLWQSFDYPVDTILPGQKFGRNLITGLNRYLSSWNSSEDPSQGEYSYQIDISGYPQFVLREGTLKIYRFGSWNGIQFSGAPQLKQNAVTRFSFISDEEELYFRFELTNKSVIHRMVLTTDGYLLGIYWNNEGKVWSLHGRIPVDDCDYYDKCGAYASCNINNIPPCNCLDGFVPKTADIYSGCVRRTSLSCHGDRFLKFSGLKLPDTERSWFDRNISLEDCRILCMKNCSCTAYAALDVSKGPTGCLLWFNDLIDMRESTEVNEDIYIRMAGTEIGVKDPSVLSSPQSAVHNPSSVKPFH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1064 442 SMART blect_4 29 151 IPR001480 -
Ssu8g1064 442 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Ssu8g1064 442 Pfam D-mannose binding lectin 71 176 IPR001480 -
Ssu8g1064 442 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 419 - -
Ssu8g1064 442 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Ssu8g1064 442 PIRSF SLG 3 424 IPR035446 -
Ssu8g1064 442 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Ssu8g1064 442 Gene3D - 18 148 IPR036426 -
Ssu8g1064 442 CDD PAN_AP_plant 329 413 - -
Ssu8g1064 442 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Ssu8g1064 442 Pfam PAN-like domain 333 398 IPR003609 -
Ssu8g1064 442 Gene3D Hepatocyte Growth Factor 331 410 - -
Ssu8g1064 442 CDD B_lectin 30 151 IPR001480 -
Ssu8g1064 442 PANTHER - 11 419 - -
Ssu8g1064 442 SMART ntp_6 333 412 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1064 Ssu-Chr8 18490593 18497692 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1064 - - gmx:100795006 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1064 8 18490593 18497692 Ssu8g1064 8 18490593 18497692 ECH
Ssu3g1934 3 61609878 61612877 Ssu8g1064 8 18490593 18497692 PCT