Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1058 ATGGACATGTTTGTCACTCTTACGCTAATCAGTTTTCATCTTCTCTTTCCCTCAACTGTAGCTGAGACCTTGTTACAGAGAATGGTGCTTGAAACGACAGAGAACCAAGATGTTCCAGCTCGCGGGATCAAGGATGATAGCTATTGTAGCTATCATAGAGTTTGCGGAGCCAATGGGAATTGCGACCTTACTAGAGCACCAGCTTGTGTGTGTTTAGAAGGATTCACACCAAAGTCACTCAGTGGGTGGGACTCGATGGACTATACACAGGGATGTGTACGCAACAAAGCATTGAATTGTACAACAGATGATTTTGTCAAATATGGTGTGTTTCAAGAACCCAGTGGCACATATATTTGGTTGAACCAAAGTTTGGGAGACGGTGGTTGCAAAGAAAGATGCATGAGAAACTGTTCTTGTGTGGCTTATACCACTGATAGTGGTTGCAAATTGTGGACTGGTCATTTATTTGATGTTAGAGTCATCAAAGGAGGAGAGCAGGATTTTTATATTCGAATGCCAGCTTCAGAGCTAGGCACTGAAGAGGAAAATAGCAGGCATGGTGAGCGAAAGATAGTGGGGGGAATAATTGGGAGTACTGCTGCAATAATTTCTGCGATGATCATTTGTTGCTGTTATTATATGCACAGAAGGAGGACAAAGTTAGAAGGAAATATAAGGACTACTGAGACAGTTAGTCATATTAATGAAGAACATAAAGAAGATATGGAGCTTCCAGTATTTGACCTATCAAGAATAGCTATAGCCACTGATAACTTCTCAGTCAACAATAAGCTTGGAGAAGGTGGTTTTGGACCTGTGTACAAGGGTACATTAGATGACGGGAGACAAATTGCTGTCAAGAGGCTTTCAAGTAGTTCCGGGCAGGGactaaatgaattaaaaaatgaagtaatACTAATAGCCAAACTTCAGCACCGCAATCTTGTAAGGCTTCTTGGATGCTGCATCCAAAACCAGGAGAAATTGCTGATATATGAATACATGCCTAACAGAAGccttgattattttatttttgatgaaagaagaggaaaaatcTTGGATTGGCCTAAGCGCTTTAACATCATTTGTGGGATTGCTAGGGGCCTATTATATCTTCATCAAGATTCTAGGCTGAGGATTATACATAGAGATCTCAAAGCAGGTAACGTTTTGCTCGACAGTGAGATGAACCCGAAGATCTCAGACTTTGGTTTGGCTAAAAGTTTTGGGGGAGATCAGAGCAAAGGAAACACAAATAGAGTAGTGGGAACATATGGATATATGGCCCCAGAATATGCTGTTAATGGACACTTTTCAGTGAAATCAGATGTCTTTAGCTTTGGGATTTTGTTGCTTGAGATAATAACTGGGAGAAAAAGTAGAAGGTTCTATTATCCAGATGACAATATCAACCTATTTGGACATGCATGGGATTTATGGGAACAAGGAAGGCCTTTAGAACTGATTGATGAATGCCTCAACGATTCATGGATCTTGTCTGAAGTACAACGCTGCATCCATATCAGCCTCCTGTGTGCACAGCAGCATCCCCAGGATAGGCCAAGCATGTCAACTGTGGTTCTGATGTTGGGTAGTGAAATTGACTTGCCTCAACCTAAAATTCCTACTTTTTTCATTGGAGAACCTTCTGATGGCATAAGTTGCTCTTGtagtaaaaatgaattgagtgtTACAGTGCTGGATGCTAGATAA 1716 0.3969 MDMFVTLTLISFHLLFPSTVAETLLQRMVLETTENQDVPARGIKDDSYCSYHRVCGANGNCDLTRAPACVCLEGFTPKSLSGWDSMDYTQGCVRNKALNCTTDDFVKYGVFQEPSGTYIWLNQSLGDGGCKERCMRNCSCVAYTTDSGCKLWTGHLFDVRVIKGGEQDFYIRMPASELGTEEENSRHGERKIVGGIIGSTAAIISAMIICCCYYMHRRRTKLEGNIRTTETVSHINEEHKEDMELPVFDLSRIAIATDNFSVNNKLGEGGFGPVYKGTLDDGRQIAVKRLSSSSGQGLNELKNEVILIAKLQHRNLVRLLGCCIQNQEKLLIYEYMPNRSLDYFIFDERRGKILDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKAGNVLLDSEMNPKISDFGLAKSFGGDQSKGNTNRVVGTYGYMAPEYAVNGHFSVKSDVFSFGILLLEIITGRKSRRFYYPDDNINLFGHAWDLWEQGRPLELIDECLNDSWILSEVQRCIHISLLCAQQHPQDRPSMSTVVLMLGSEIDLPQPKIPTFFIGEPSDGISCSCSKNELSVTVLDAR 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1058 571 Pfam Protein tyrosine and serine/threonine kinase 262 529 IPR001245 GO:0004672|GO:0006468
Ssu8g1058 571 PANTHER - 32 568 - -
Ssu8g1058 571 ProSiteProfiles PAN/Apple domain profile. 100 174 IPR003609 -
Ssu8g1058 571 Pfam PAN-like domain 100 159 IPR003609 -
Ssu8g1058 571 Gene3D Transferase(Phosphotransferase) domain 1 336 537 - -
Ssu8g1058 571 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 568 - -
Ssu8g1058 571 Pfam S-locus glycoprotein domain 45 79 IPR000858 GO:0048544
Ssu8g1058 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Ssu8g1058 571 ProSiteProfiles Protein kinase domain profile. 260 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1058 571 SUPERFAMILY Protein kinase-like (PK-like) 242 531 IPR011009 -
Ssu8g1058 571 SMART serkin_6 260 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1058 571 CDD STKc_IRAK 266 531 - -
Ssu8g1058 571 CDD PAN_AP_plant 98 174 - -
Ssu8g1058 571 Gene3D Phosphorylase Kinase; domain 1 233 335 - -
Ssu8g1058 571 SMART ntp_6 100 173 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1058 Ssu-Chr8 18337875 18341524 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1058 179 546 Receptor kinase-like Gene Family AT4G23190 49.738 1.93e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1058 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1058 - - adu:107462470 731.865