Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1056 ATGCAAGGAGTTGGAACCTTTCACTTCAAACCAATCACTTTTTACCTTCTCTTCCTTACCTCCAAACTCCTAGCAGCAACAGACACCCTTTCTCCGTCGCACTTCCTCACTGAAAACCAAACCTTAGTTTCCAAAACCGGAACCTTCGAACTGGGTTTCTTCACACCCGGCAACTCTGGCAACCGTTATTTGGGCATATGGTACAAAGACATCCAACCTCAGACCGTTGTATGGGTCGCAAACCGAGAAACACCCACCAAAGACGCCTCACTTGTCTTGCACATAAACACCCCCCAAAACGTAGTCCTCCTTAGTCACAACAAAACCGTTCTATGGTCCGTAACCCCAAAGACAAAACCCCACAAGCCAGTTCTTCAGCTCTTGGACTCTGGAAACCTCGTCCTCAGAGAGCGACATGAAGAGGATCAAGAGAAGTATCTCTGGCAAAGCTTTGACTACCCTTGTGACACGCTTTTACCAGGGATGAAGCTTGGGAAAGACCTGAGAACTGGCCTTGATCGACGCCTCACCGCGTGGAAGAGTGAAAACGACCCTTCACCTGGGAACTTGATGTGGGGAATGTATGTGACTAATTACCCCGAACCAATGCAGTGGATAGGTTCGAGGAAGAGCTTCAACAGTGGTCCATGGAATGGTGTTCAATACAGTGGCAAACCAACCTTGAAACGCCACCCGGTTTTCGAGTTCATATACTTCTCCAATGAGGAGGAGGTGTACTACATGTTCCGCCTGTGGAACAACTCTGTCAAGGCCAGGATGGTGTTGAATCAGAAGAGCTTTGTGAGACAGCATTATGTGTGGGTGGAGGAAAAGTACTGGAAGATGTATGGTTCGCTGCCGAGGGATTTTTGTGATAAGTATGGCGCTTGTGGTCCTAATGGGAAGTGTGATCAGGGTGAGTTACCTGCTTTTTGTGATTGTTTGAAGGGGTTTAAGCCTAAATCGCCTGTGGAGTGGAGTGGAATGAAGTATTCTCAAGGGTGTGTGCGTGATGGAGCGTGGGAGTGCAGGAATGATGGGTTTTCCAAATATGTTGGGATGAAAGTGCCTGATACCGAGTTTAGTTGGTTGAACCAGAACATGTCTTCGTTGGAGTGCAGAGAGAAGTGCTTGAGGAATTGTTCTTGCGCAGCTTATGCAAACTCGGATATCAGAGAAGGAGGCAGTGGTTGTGCCATGTGGTTTGGGGATCTTATGGACTTAAGGGTTCAGCCGGATGCAGGGCAGGATCTTTATGTAAGAGTGCCTGCTTCTGAGTTAGAGACTAAAAATGGACACAAGGTCAAGGTAGGAATTGCAGTTGGAAGCACCATAGCAATATTATGTGTCCTACTCTTGGCTCTCTATTTCGTATGCAGAAGAAGGGCGGGCGCGAAAAAGAATATAGCAATAGTGGACCATtacaaagaagaagaggaggaagataTGGAGCTTCCATTGTTTGACCTATCAACTATAGCTAGTGCCACTGATAACTTTTCAATCAGCAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAGCATTGGAGAATGGGCAAGAAATTGCTGTGAAGAGACTTTCTAGTGGTTCTGGACAAGGGCTCAAGGAATTTAAAAacgaaattaaattaatagccAAACTTCAACACCGTAATCTTGTAAGGCTTCATGGATGTTGCATTCAAGGTGCAGAGAAGTTGCTAATATACGAATATATGCATAACAAAAGCTTGGATTTCTTTATATTTGATCAAACACAGAGAATGCTGTTGGATTGGCCTAAGTGCTTCAATATAATTTGTGGGATTGCGAGGGGCCTTCTCTATCTTCATCAGGACTCCAGACTCAGAATCATTCATAGAGATCTGAAAGCAAGTAACATCTTACTTGACAGTGAGATTAATCCAAAGATCTCGGACTTTGGCTTGGCTAGGATTTTGTGTGGAGACCAGAATGCAGCAACTACACATAGGGTGGCTGGAACTTATGGATATATGGCACCAGAATATGCAATAGATGGGAACTTCTCAGTGAAATCCGATGTCTTCAGCTTTGGCATTTTGTTATTGGAGATAGTATCCGGAAAGAAAAATGTAGGAAGCAATCAgcaagaaaaaagtagaaaccTTATTGGACATGCATGGGATTTGTGGATAGAAGGGAGGCCATTAGAATTGATTAGTGAATACAACACAAATTCTTGCAATCTCTCTGAAGCACTGCGTTGCATCCATATCAGTCTTCTGTGTCTGCAGCAGCATCCACATGACAGGCCAAGCATGTCATCTGTAGTTATGATGTTAGGTAGTGAAATTGGCTTGCCTCAGCCCAAACGACCAGCTGTATTTGTTGGAGAAGATTCACCACATCAGGAATATTCTTCATCATATAAGAATGACTTACATTCTGTCAATGAATTAAGTATTACAGTTTTAGAAGCTCGTTAG 2457 0.4339 MQGVGTFHFKPITFYLLFLTSKLLAATDTLSPSHFLTENQTLVSKTGTFELGFFTPGNSGNRYLGIWYKDIQPQTVVWVANRETPTKDASLVLHINTPQNVVLLSHNKTVLWSVTPKTKPHKPVLQLLDSGNLVLRERHEEDQEKYLWQSFDYPCDTLLPGMKLGKDLRTGLDRRLTAWKSENDPSPGNLMWGMYVTNYPEPMQWIGSRKSFNSGPWNGVQYSGKPTLKRHPVFEFIYFSNEEEVYYMFRLWNNSVKARMVLNQKSFVRQHYVWVEEKYWKMYGSLPRDFCDKYGACGPNGKCDQGELPAFCDCLKGFKPKSPVEWSGMKYSQGCVRDGAWECRNDGFSKYVGMKVPDTEFSWLNQNMSSLECREKCLRNCSCAAYANSDIREGGSGCAMWFGDLMDLRVQPDAGQDLYVRVPASELETKNGHKVKVGIAVGSTIAILCVLLLALYFVCRRRAGAKKNIAIVDHYKEEEEEDMELPLFDLSTIASATDNFSISNKLGEGGFGPVYKGALENGQEIAVKRLSSGSGQGLKEFKNEIKLIAKLQHRNLVRLHGCCIQGAEKLLIYEYMHNKSLDFFIFDQTQRMLLDWPKCFNIICGIARGLLYLHQDSRLRIIHRDLKASNILLDSEINPKISDFGLARILCGDQNAATTHRVAGTYGYMAPEYAIDGNFSVKSDVFSFGILLLEIVSGKKNVGSNQQEKSRNLIGHAWDLWIEGRPLELISEYNTNSCNLSEALRCIHISLLCLQQHPHDRPSMSSVVMMLGSEIGLPQPKRPAVFVGEDSPHQEYSSSYKNDLHSVNELSITVLEAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1056 818 PIRSF SRK 5 818 IPR024171 GO:0004674
Ssu8g1056 818 SMART ntp_6 343 422 IPR003609 -
Ssu8g1056 818 Pfam Domain of unknown function (DUF3403) 777 818 IPR021820 GO:0004674
Ssu8g1056 818 Pfam Protein tyrosine and serine/threonine kinase 502 770 IPR001245 GO:0004672|GO:0006468
Ssu8g1056 818 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Ssu8g1056 818 Pfam D-mannose binding lectin 75 180 IPR001480 -
Ssu8g1056 818 SMART blect_4 33 154 IPR001480 -
Ssu8g1056 818 Pfam PAN-like domain 343 408 IPR003609 -
Ssu8g1056 818 SUPERFAMILY Protein kinase-like (PK-like) 482 780 IPR011009 -
Ssu8g1056 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 28 815 - -
Ssu8g1056 818 PANTHER - 28 815 - -
Ssu8g1056 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Ssu8g1056 818 ProSiteProfiles PAN/Apple domain profile. 343 423 IPR003609 -
Ssu8g1056 818 Gene3D Transferase(Phosphotransferase) domain 1 576 776 - -
Ssu8g1056 818 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1056 818 Gene3D - 21 151 IPR036426 -
Ssu8g1056 818 CDD STKc_IRAK 506 771 - -
Ssu8g1056 818 CDD B_lectin 33 154 IPR001480 -
Ssu8g1056 818 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Ssu8g1056 818 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1056 818 CDD PAN_AP_plant 335 423 - -
Ssu8g1056 818 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Ssu8g1056 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1056 Ssu-Chr8 18319467 18322715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1056 435 797 Receptor kinase-like Gene Family AT4G23190 51.058 3.66e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1056 PK_Tyr_Ser-Thr 6.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1056 - - aip:107610641 1121.69