Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1055 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGTGGGGTATCAGGAAGGACAGGGCCCCACTCCCTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCTGGGGAGGATGTTAAAATGATATCAGGGGAGGCTCCCATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAGCTCACTAGAAGGTCCTGGATCATGGCCATCCAAGGAAAAAGGAGAACTTTGCACAAAGAGGACTTGGCATCTGCAGTTATAGCCACTGATATATTTGACTTCTTGATCACTTTGGTTTCCAACTCTGACAGTCATGCACTTGGTGCCGCCACCACTGTCATGGAAGTGGAAACTATGGATTACTCTTAA 372 0.4704 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSDSHALGAATTVMEVETMDYS 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1055 123 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Ssu8g1055 123 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
Ssu8g1055 123 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Ssu8g1055 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Ssu8g1055 123 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1055 Ssu-Chr8 18317833 18318204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1055 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.855 2.83e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu8g1055 CBFD_NFYB_HMF 1.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1055 - - gmx:100820378 230.335