Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1052 ATGGATGCCACCACTAGAACTTGCCGCCGCCGCCTAAGTATTCTAGATTTATTCCACTTTATAGCAACTAATCCTACTACCAAACAATCAAGCAATGATAGAATGTCTAGAAAAAAGAGAACCTTATCTGATGGAGGGCTCAATGCTTGGGAGATGAATACCTTGAAATCGTCCAACCTACCACACAAGTTAAAAGAATTAAACCATGATAACAAATGGAACACTACTGTGCAGCAACAACAAGAAGATTGGGAACGTGGAGGACTCCCTCAAGGGAAGTTCATGATATTGGAGACACCAAAGGCTTCCTTTGGGAAACTCTCCACCAGGGAGTATCTTCGGGAAGTCTCGTTCCCTAGCgtgaatagaaagaaaaaggaacacGCCAATGAGGGCCACAAGAAGAGGGGAGTCCTAGTGGCAGTGACAGTTTCTTTGGCCGTGGTAGCGATTTCTGGTATGCTAATATTACTTGGCTGGTGTTATAGAAAGAAATCACGCACCAATGTGAAagAGAGATCAGACTTCAGTATCAAAGCAGATCAAAACAGTGGAATGCAAGTGGATGATATGGACCTACCAGTTTTTGACTTGTCAACAATAGATAAGGCCACTAGCAAATTtacaatcaacaacaaaattGGAGAAGGAGGTTTTGGACCTGTATACAGGggAATTCTAGCAGATGGGCTGGAAATTGCTGTCAAGAGGCTTTCAACAAGCTCGGGACAAGGATTGACCGAATTCAAGAATGAAGTGAAATTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAATACATGCCTAACGGTAGCCTGGactcatttatttttgATCAGGAAAGAAGTGAATTACTAGACTGGTCAAAGCGCTTCAACATTATATGTGGAATTGCTAAGGGTCTTCTCTATCTTCATCAGGATTCCAGACTAAGGATTATCCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAGTGAGTTGAACcccaaaatttcagattttggcATGGCTAGAATTTTTGGTGGAGATCAGAATGAAGGAAGCACAAAGAGAATAGTTGGGACTTAG 1122 0.3895 MDATTRTCRRRLSILDLFHFIATNPTTKQSSNDRMSRKKRTLSDGGLNAWEMNTLKSSNLPHKLKELNHDNKWNTTVQQQQEDWERGGLPQGKFMILETPKASFGKLSTREYLREVSFPSVNRKKKEHANEGHKKRGVLVAVTVSLAVVAISGMLILLGWCYRKKSRTNVKERSDFSIKADQNSGMQVDDMDLPVFDLSTIDKATSKFTINNKIGEGGFGPVYRGILADGLEIAVKRLSTSSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNGSLDSFIFDQERSELLDWSKRFNIICGIAKGLLYLHQDSRLRIIHRDLKASNVLLDSELNPKISDFGMARIFGGDQNEGSTKRIVGT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1052 373 SUPERFAMILY Protein kinase-like (PK-like) 190 373 IPR011009 -
Ssu8g1052 373 Gene3D Transferase(Phosphotransferase) domain 1 284 373 - -
Ssu8g1052 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Ssu8g1052 373 Pfam Protein tyrosine and serine/threonine kinase 209 363 IPR001245 GO:0004672|GO:0006468
Ssu8g1052 373 Gene3D Phosphorylase Kinase; domain 1 165 283 - -
Ssu8g1052 373 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 176 373 - -
Ssu8g1052 373 ProSiteProfiles Protein kinase domain profile. 208 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1052 373 SMART serkin_6 208 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1052 373 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 176 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1052 Ssu-Chr8 18188171 18214214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1052 137 373 Receptor kinase-like Gene Family AT4G23190 54.583 3.25e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1052 PK_Tyr_Ser-Thr 3.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1052 - - gmx:100778155 434.106