Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1049 ATGGCAGATGATCAATTTCAGGCAAGTGGAAACTGGTGGGACACAGCAAGAAACGTGAGGTATGAAAGCGGGGCATCACAGTCATCTTCCTCTGCCATCACCAACATAGGCAACTTTGGTTGGCAACCTTCTGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACACACAGAATAAGCTTCAACCCCCAGATTCTGCCACTTCCACTGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTAAGAGGAGAGAAGGGTACAGAGAACAGTTTCCGGTCGATGCTGCAAGAGAACTTGAGTTCATCAAGAACCAATTTTCAGCAAGAAACTGGGATGGGGTTGTCTCAACAAGTTCAGTGGAGGTCAGAGAAGATGTTCTCCACAGAGTCATCAACCAACGAGTTCAAGCAAGTGAATAGGGGTTTCTCTTTGGATCAGAGCCACTTTAGTCCTCAATATAGCTCTGGGGATAGCACAGTGACAAGCCAAGGGTTACCCTCCTCTAATTTTCAGATGGATTCCTCAACCTTATATGGGACCCCTTCAATATTGCAAGGACTATTGGGACCTGACAATAACCAACCCCAACAACAACCTTCTTCCTTTGAGAACCGCCCCATGAGTTTTCCATACCCAACAAGCTATGGATTAAACTCTAATGACTTAGTTCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGCTTCACCTCCAAAACAACCACCCAATAACCCGTTGCATTTCACTAACAGCGCACCCTTTTGGAACGCTTCTGATGCTGCAAACATCAAAGATGTTCAATCCAGCTTCTTCCCCTCATTGCAACCCCCCTTCTCCACGCCAAATTTTGAAGTACAGTCAAAGAATATATCTGAAGTTAGGGATTCGGGTACTGTGGTAAAAAAAAGTGGGAATGAGCCAGTACCCAAAAGGACCCGTAACGAAACACCATCTCCTTTGCCAGCTTTTAAGgtgagaaaagagaagatggGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCGGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTTACTGCTTTAAGCACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGAGTTCTGGTAAATCTAAGGAAGCTGAGTGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCGGTTTCCAGCACATTTCCAGTTACTCATGAAACCACAGTTGATTTTTGGACACCAACATTCGGAGGAACTTCCagataa 1368 0.4466 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNIGNFGWQPSDMADMKPRSSMDSSSVVFHDTQNKLQPPDSATSTDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETGMGLSQQVQWRSEKMFSTESSTNEFKQVNRGFSLDQSHFSPQYSSGDSTVTSQGLPSSNFQMDSSTLYGTPSILQGLLGPDNNQPQQQPSSFENRPMSFPYPTSYGLNSNDLVPSWSKVPQFLRASPPKQPPNNPLHFTNSAPFWNASDAANIKDVQSSFFPSLQPPFSTPNFEVQSKNISEVRDSGTVVKKSGNEPVPKRTRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQSSGKSKEAECPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1049 455 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 444 - -
Ssu8g1049 455 MobiDBLite consensus disorder prediction 316 341 - -
Ssu8g1049 455 MobiDBLite consensus disorder prediction 167 234 - -
Ssu8g1049 455 Gene3D - 345 403 IPR036638 GO:0046983
Ssu8g1049 455 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 444 - -
Ssu8g1049 455 CDD bHLH_AtbHLH_like 341 392 IPR045239 -
Ssu8g1049 455 SMART finulus 346 390 IPR011598 GO:0046983
Ssu8g1049 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Ssu8g1049 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 400 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1049 Ssu-Chr8 18161345 18165043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1049 103 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.583 1.54e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1049 - - gmx:100778697 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1049 8 18161345 18165043 Ssu8g1049 8 18161345 18165043 ECH