Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1047 ATGGGGACAAAGGCAAAGAAAGCTATGAAGAAGAATATGAAAAGGGTTACCTCTAATAAACCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCGCCGAACGGAAGCCGCCGGAGAATACAGCCACGGTTTTGTATGTGGGTCGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGATTGAGAATTGCGAGGAATAAAAAGACTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTCTGGAACACCTTCTCCAAGTTTATGTGATACCTCCGGAGCATGTTCATCCAAGATtatGGAGAGGATTCAATTACCGTTACAAGCCATTGGATTCAGTCCAATTGAACGGAAGCGTCACGACAAGGAAAGAACATTGGAAAGAGCACAAGAAATTGGTGGAGAAGATTCTGAAACATGACAAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGAGCGTTTTGCCTTTATCAATCTGTGGTTGCTcatttgttttcataaaatag 636 0.4104 MGTKAKKAMKKNMKRVTSNKPSEGADFLPLEGGPARKLAERKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLLEHLLQVYVIPPEHVHPRLWRGFNYRYKPLDSVQLNGSVTTRKEHWKEHKKLVEKILKHDKKRRKRIEAAGIDYECPEIVSVLPLSICGCSFVFIK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1047 211 MobiDBLite consensus disorder prediction 1 40 - -
Ssu8g1047 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Ssu8g1047 211 CDD RRM_NIFK_like 50 122 - -
Ssu8g1047 211 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 199 - -
Ssu8g1047 211 PANTHER - 1 199 - -
Ssu8g1047 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 116 IPR000504 GO:0003723
Ssu8g1047 211 SMART rrm1_1 50 123 IPR000504 GO:0003723
Ssu8g1047 211 SUPERFAMILY RNA-binding domain, RBD 48 193 IPR035979 GO:0003676
Ssu8g1047 211 Gene3D - 3 124 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1047 Ssu-Chr8 18015203 18017521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1047 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 33.784 2.53e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1047 K14838 - gmx:100778780 331.643