Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu8g1046 | ATGGGGACAAAGGCAAAGAAAGCTATGAAGAAGAATATGAAAAGGGTTACCTCTAATAAACCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCGCCGAACGGAAGCCGCCGGAGAATACAGCCACGGTTTTGTATGTGGGTCGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGATTGAGAATTGCGAGGAATAAAAAGACTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTCTGGAACACCTTCTCCAAGTTTATGTGATACCTCCGGAGCATGTTCATCCAAGATtatGGAGAGGATTCAATTACCGTTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCACGACAAGGTATCTAGTTATGGATAA | 489 | 0.4233 | MGTKAKKAMKKNMKRVTSNKPSEGADFLPLEGGPARKLAERKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLLEHLLQVYVIPPEHVHPRLWRGFNYRYKPLDSVQIERKRHDKVSSYG | 162 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu8g1046 | 162 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Ssu8g1046 | 162 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 49 | 127 | IPR000504 | GO:0003723 | |
Ssu8g1046 | 162 | CDD | RRM_NIFK_like | 50 | 122 | - | - | |
Ssu8g1046 | 162 | Gene3D | - | 3 | 124 | IPR012677 | - | |
Ssu8g1046 | 162 | PANTHER | - | 1 | 158 | - | - | |
Ssu8g1046 | 162 | PANTHER | MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN | 1 | 158 | - | - | |
Ssu8g1046 | 162 | SMART | rrm1_1 | 50 | 123 | IPR000504 | GO:0003723 | |
Ssu8g1046 | 162 | SUPERFAMILY | RNA-binding domain, RBD | 32 | 139 | IPR035979 | GO:0003676 | |
Ssu8g1046 | 162 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 51 | 117 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu8g1046 | Ssu-Chr8 | 17992094 | 17994172 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu8g1046 | 49 | 122 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 33.784 | 8.10e-09 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu8g1046 | K14838 | - | gmx:100778780 | 286.96 |