Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1040 ATGGACTCGCAACAGCTTTTCAGTTTTGGTGTTACTAGTGCGGGATTACCTCACATGTCATCTTTTCCCACTGTTCCATCACTACCCAACAGGCTGCTTGGATCCTTAAAATTTGACGCAGGAAACTCACCTAATTCACCCTTTTCCACTTACTTTGATTCTGATACTCTTTCTGCATTGAGCGACAGCCAGGATCAATACAGCCCTGGAGAAATCCTCTCTGGTGTCAGCCCCTCTTGTAACTCTTTGATGGAAACCAACCATTATATGCACAGATCAATCTCTCTTCTACAGAACGCTAGTTGCAACCAAAAAATCAAACACGCTTTGCTCGAACTAGAAACTGCTCTGATGGCCCCTGATGATGATGAAGTTACCACACCGAAAACATTGGCCGAGACCACCAGGCCAATGGCAATGGCAATGGCATCTGGCCAGAGATACAGGGCCTGGAGCCCTGAGAACCATGGCTCACAATACACTCAAAGTAAGCCATCATATGTTGCCGGCAACAGGCAGTCAAGTGAAGTTGTGCATGTAGAGAAACGGCAAAAGTTGATGGAGGAAGCATCGCTGCAAGGTTTCCCACCAAACAATTTGAAGCAATTGCTGATTTCATGCGCCAATGCCCTGTCTGAGAACAACATGAAAGAGTTTGATCAATTGGTAGGAAAGGCTAGAGATGCTGTGTCCATCAATGGGGAGCCAATCCAGCGGCTCGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCATCGGGGAATAGCATCTACCCTGCCCTCAGGTGCAGAGAGCCTGAAGGCAATGAGTTGCTCTCTTACATGCAACTGCTGTTTGAAATCTGCCCCTACTTAAAGTTTAGTTACATGGCTGCCAATGGAGCCATTGCGGAAGCGTGCAGAAACGAGGACCGCATACACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATGACTCTTCTTCAAGCCCTGGCAGCAAGACCTGGTGGTGCTCCCCATGTGCGGATCACGGGGATTGATGATCCTGTTTCTAAATATGCTCGCGGTGGTGGACTAGATGTTGTTGGGAAAAGGTTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTGCCTGTTTTTGCTCCGGATGTGACAAGGGAAATGCTTGATATCAGGCCCGGAGAGGCCTTGGCTGTGAACTTTTCCTTGCAGCTCCATCATACAGCTGATGAGAGTGTTCATGTGAGTAACCCAAGGGATGGACTTTTGAGGCTGGTAAAGTCACTCTCTCCCAAGGTGACCACACTGGTGGAGCAGGaatcaaacacaaacacaactCCTTTCTTCAACAGGTTTATTGAAACCTTGGATTACTACTTGGCAATCTTCGAGTCTATTGATGTCACCCTCCCAAGAGATAGCAAGGAGCGGATCAATGTGGAGCAACATTGTCTGGCCAGGGATATTGTGAATATTATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTATTCGGCAAGTGGAAGTCAAGGTTGACAATGGCTGGCTTTCGTCAGTGTCCTTTGAGCTCTTATGTAATTCTGTCATAA 1602 0.4682 MDSQQLFSFGVTSAGLPHMSSFPTVPSLPNRLLGSLKFDAGNSPNSPFSTYFDSDTLSALSDSQDQYSPGEILSGVSPSCNSLMETNHYMHRSISLLQNASCNQKIKHALLELETALMAPDDDEVTTPKTLAETTRPMAMAMASGQRYRAWSPENHGSQYTQSKPSYVAGNRQSSEVVHVEKRQKLMEEASLQGFPPNNLKQLLISCANALSENNMKEFDQLVGKARDAVSINGEPIQRLGAYMVEGLVARKEASGNSIYPALRCREPEGNELLSYMQLLFEICPYLKFSYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGGGLDVVGKRLALMSEKFGIPVEFHGVPVFAPDVTREMLDIRPGEALAVNFSLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVILS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1040 533 MobiDBLite consensus disorder prediction 153 173 - -
Ssu8g1040 533 ProSiteProfiles GRAS family profile. 191 533 IPR005202 -
Ssu8g1040 533 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 21 530 - -
Ssu8g1040 533 Pfam GRAS domain family 200 530 IPR005202 -
Ssu8g1040 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 530 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1040 Ssu-Chr8 17880202 17881803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1040 190 530 GRAS Transcription Factor Family AT5G48150 63.743 6.31e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu8g1040 GRAS 1.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1040 - - gmx:100799073 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1040 8 17880202 17881803 Ssu3g1974 3 64793483 64795186 PCT