Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1039 ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTGGTGATTGGAGTTGGTTTGGCAATTTCTGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCACAGATAGGCAATAGCAGTTCCCGGAGGGCAGCTACCATACCCATCCGCGAAAATGGTGTTGATTCTTGTAATATTCTATCAGACTCAACCTTAGGTCCAGATTCACCTGTAAGGTCTGGACGAAATGGCATGTCCTTCTGGATTGATGGCTTCAAGAAGAGCAGTAACATGGTTTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAggcaacatataattttacaacACTCATAGGACAAGGGGCATTTGGTCCTGTTTATAAAGCTCGGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTCCTTGCAACTAATTCTAAGCAAGGGGAAAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTTTTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGCTGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGTGACATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGGTGGTGGATAAACAGGCCGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAACACTGAGGGGAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTTGAGGGAAAATGTGATTTTCAAGAGCTGAATGAAGTGGCAGCCCTTGCATACAAATGCATCAACCGTGCCCCAAAGAAGCGCCCTTCCATGAGGGACATAGTGCAAGTGTTGACACGTGTCCTTAAATCAAGGCACCAAAGGAATCATCACAAGAAGTCCCTCTCAGCCACAGCCGATGAAGTCTCCATTGATGTTGATCAGCTAGAAACCAAGAGCTCTCTCACTGACCACCGAAGAGAAGAATCTATAGATAGTGCAGCTGACATGTATGATGTGTAG 1293 0.4385 MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAATIPIRENGVDSCNILSDSTLGPDSPVRSGRNGMSFWIDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKARMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGFCAEKGQHMLVYVYMSKGCLASHLYSEENGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEVVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNEVAALAYKCINRAPKKRPSMRDIVQVLTRVLKSRHQRNHHKKSLSATADEVSIDVDQLETKSSLTDHRREESIDSAADMYDV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1039 430 CDD STKc_IRAK 119 377 - -
Ssu8g1039 430 SUPERFAMILY Protein kinase-like (PK-like) 102 385 IPR011009 -
Ssu8g1039 430 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Ssu8g1039 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Ssu8g1039 430 PANTHER OS01G0253100 PROTEIN 5 405 IPR045271 GO:0004714|GO:0006468
Ssu8g1039 430 MobiDBLite consensus disorder prediction 409 424 - -
Ssu8g1039 430 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 405 - -
Ssu8g1039 430 MobiDBLite consensus disorder prediction 409 430 - -
Ssu8g1039 430 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1039 430 Coils Coil 389 409 - -
Ssu8g1039 430 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Ssu8g1039 430 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1039 430 Gene3D Transferase(Phosphotransferase) domain 1 189 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1039 Ssu-Chr8 17828306 17832328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1039 24 375 Glycoside Hydrolase AT3G07070 39.084 3.01e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Ssu8g1039 PK_Tyr_Ser-Thr 2.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1039 - - gmx:100799586 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1039 8 17828306 17832328 Ssu8g1039 8 17828306 17832328 ECH
Ssu8g1039 8 17828306 17832328 Ssu3g1975 3 64851359 64855095 PCT