Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1036 ATGCCAACTGTGTGGTTCTCTTTGAAGAGGTCTCTACACTGCAAATCAGAGCCAACAGATGTTCATGACCCAAAATCAAAGAAGCACTTGAGCACAATCTTGACCAAAAGGGCAGCGTCAGGGTCAGGTAGGTCAGGTTGTTCCAGGTCCATAGCAAATCTCAAAGATGTTATCCACGGAAGCAAGAGGCACTTAGAGAAGCCACCAAGTTGCAGCCCAAGATCCATAGGTAGCAGTGAGTTTCTCAACCCAATAACCCATGAAGTGATCTTGAGCAACTCAAGGTGTGAGCTGAAAATCACTGGCTATGGAGGGTTCCAAGAAGGGGTTGGCAGTGATGGTGGAAGTGGCAATAATGGGGGTGCCATAAGTGGTGATTTAAGTACCTTTGTGGGCACTTTAAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCCACAATGCACTATTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTTCATCAGATAAAGAATGGTCTGGCTTCCATGGTGTTGGAGTTGGACCTCATTCAAGCACCAGGGTGCCTCTTGATACAGATTCAAATGTGTCTTCCACTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCCGCTGAAGCTCATCATCTCTCCAAGCATGCTGTTACTGAACTCGTGGAAGGAGATTCATcaagaaaaatagtggagatAATATGCAGGACGAGCTGGTTAAAGTCTGAAAACCAATGTGGTCGAATTGAGAGAGTTTTGAAAGTGCATAACATGCAAAAGACTCTGGCTAGATTTGAAGAGTATAGGGAGTTGGTGAAAGTCAAAGCTAGCAAACTCCCCAAGAAGCATCCAAGGTGCCTTGCTGATGGGAATGAGCTTTTGAGGTTCTATGGCACCACTGTTGCATGCTCTCTTGGTCTCAATGGCTCTTCCAGTCTGTGCCGATCTGAAAAGTGCTGTGTTTGTAGAATCATCAGAAATGGGTTTTCTACCAAGGAGGAGCTCAAGGGTGGAATAGGTGTTTTTACTACTTCCACTAGTGTAAGGGCTTTTGAATCTATTGAGGTTTTTGACCATGACCCTTCATTGAGGAAAGCACTTATAGTCTGCAGAGTCATTGCTGGCAGGGTCCATAGACCTCTGGAGAACATTCAGGAAATGGCAGGACAAACGGGCTTTGATTCATTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCCATGCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAACCATGA 1308 0.4488 MPTVWFSLKRSLHCKSEPTDVHDPKSKKHLSTILTKRAASGSGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSDGGSGNNGGAISGDLSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSSDKEWSGFHGVGVGPHSSTRVPLDTDSNVSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYRELVKVKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCRSEKCCVCRIIRNGFSTKEELKGGIGVFTTSTSVRAFESIEVFDHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLHARALLPCFVVICKP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1036 435 PANTHER - 2 435 - -
Ssu8g1036 435 Gene3D - 216 434 - -
Ssu8g1036 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 435 - -
Ssu8g1036 435 ProSitePatterns Zinc finger C2H2 type domain signature. 203 224 IPR013087 -
Ssu8g1036 435 SUPERFAMILY ADP-ribosylation 226 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1036 Ssu-Chr8 17782695 17784310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1036 1 435 C2H2 Transcription Factor Family AT5G54630 68.330 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g1036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1036 - - gmx:100800127 766.918