Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1034 atgttagtaGTCAGCAttgaagagaagaaaacacaagaagaaTTCATTAGCCAACTATTTGATCAGACATCTGGACTATTAACTAAGGACACGGCAGAGATACTATGGATCACTTGTTGGGAAGATTTGATTCATTTAAAGAAAGAAGTTGGAGATGTTGATTTATGCCTCCCAAGAGAATCATACAGAAGCACCAATGAAATTAGTTCAGAAATTGGCTCAATAGCTAGAGAAAAGAtccaaaaattgattaataccTGTTATCCTCAGCTAAAAGAAAATGTTCTTCACtgtttgacaaaaaataattttccattCAATGTTCCTAAGGAAGAGGATGACTCCAAGATATGGCATGCCACTTACATGGGATCACTTTCTTCTAGAAGATATTTGGGTCATGTTTTGCCCCAGCACATATCAGAAACACAAAACAAGGAAGACGAatcacctaaaaaaaataatcataaaagcCAAGgttctaataaaaaatcaaataagaagtcTGAGTCTTCTGGCTCTgaggataaagataaaaaaacatcTATGACTACCATGGCTATAATTATATTGGTGACATTTTTAGGTGCAGCACTGCTTTTGTTATGTTGTTGTCGATTATGTGGGAATGGTCAAGTTAGTCAAAATGATGAGAGACCCCTTCTTAGCATGAGCATGAATGACTACTCAGTTGGTTCTTCTTCTAATAACAATccatataaaaattcaataaaagagGAGAAATTTGGGTTTCAATCATCAAGTAATACATTGGTTGATGACAAGAACTTAGTAAAAGATATTGAATTAGTAGGAGTTGCCAGTGCTGCTGCAAGACCATCATTTGAATTGAAACCTCCGCCTGGGAGAGTAAGAAATGGAGTGCTTCCTTTGAAACCTCCTCCTGGAAGACCTGATCTTCTTCCTCCTGAACCACAATCAATTAAGCCTTCTGACAATCCCATTGttcctcctccttctcctcctcctcctcctcctcctacACCACCAAAGCCTAGCAATGTTGGACCTCCACCTCCTAGTAGTGGCCCTCAACCTCCTCCACTGCCACCACCTAGAGCCAAGCCTGGTCCTCGACCCCCACCACCTCCCAAAAGTGGTGTAGGTCCTCCACGAGCTCCTCCCTCATTTGGTCCAAAGGTTGCTAAGATTCAAGGGGAAAGTGGAGCTAATTCTGAAGGTGAAGTTAATGCTCCTAAAGCTAAgctaaaaccttttttttgggATAAGGTTCAAGCTAATTCAGATCAAACAATGGTTTGGAATCAAATCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACACTTTTTGGCTATACTACTATGCCTGTAGATAAAAGCAAAggccaacaaaaaaaaatggcttcCTCCCAGGCAGCTTCACctcaatatatacaaatcatTGACTCAAAGAAAGCACAAAATTTATCTATTCtattaaaagcattaaatgtgacAATAGAAGAAGTTTGTGACGCACTTCTTGAAGGAAATGAGCTCCCTACAGAATTCCTTCAAACCTTGTTGAAGATGGCACCAACAACAGAGGAAGAACTTAAACTTAGACTTTTCAATGGTAATCTAGCCCAACTTGGGCCTGCCGATAGGTTCCTAAAAGCCTTAGTTGACATTCCATTTGCTTTTAAACGAATGGAAGCACTACTTTACATGGGTACTCTTCAAGAGGAACTCATTGCTACTCGAGATTCTTTTGCAATTTTGGAGGTTGCTTGTAAAAATCTAAGAAGTAGTCGATTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAATCGTATGAATGATGGAACATTTCGTGGCGGTGCACAAGCATTCAAACTTGATACACTGCTAAAATTATCTGATGTAAAGGGAGTAGATGGCAAGACCACTCTTTTACACTTTGTTGTTCAAGAGATAATACGCACTGAGGGCATAAGAGCTGCACGCATGGCAAAAGAAAGTCATAGTTTCTCTAGTATAAAAACAGATGACCTTCTTGAGGACATCTCTTATGAATCAGAAGATCAATATCGTGAACTTGGTCTTCAAGTGGTTTCACGTTTAAGTAGTGAACTTGAGAATGTGAAGAAAGCAGCAGCTTTAGATGCTGATGGCTTAATAGGAACAACTTCTAGACTTGGTCATGGTCtcattaaaacaaaagaatttgtaaacaaAGACCTAAGTAACATAGAGGATGATAAAGGCTTTCATGAGACAGTAAAGAGTTTCATAGAGAAAGCCGAGGTTGATGTCATGAGTTTGttagaagaagagaagaaaatcaTGGCTTTAGTGAGGAGTGCTGGTGATTACTTTCATGGGGATTCAGGGAAGGATGAAGGGTTgagattatttataatagtacGTGATTTCTTAATAATGTTGGATAAGGTATGCAAGGAGATAAAAAATGCACCGAAGAAACCAATAGTAAAAAGTGTGAAGCAAGAAAATTCTAGTCATTCTAAAGGGTCATCTTCCTCCGAAACCCATCCTCCTCCTCCTAATATTCGTCAGCGACTTTTTCCAGCAGTCACAAATAAGAGGATGGATGACTTTAGTTCAGATGATGAGAGTCCTTAG 2622 0.3474 MLVVSIEEKKTQEEFISQLFDQTSGLLTKDTAEILWITCWEDLIHLKKEVGDVDLCLPRESYRSTNEISSEIGSIAREKIQKLINTCYPQLKENVLHCLTKNNFPFNVPKEEDDSKIWHATYMGSLSSRRYLGHVLPQHISETQNKEDESPKKNNHKSQGSNKKSNKKSESSGSEDKDKKTSMTTMAIIILVTFLGAALLLLCCCRLCGNGQVSQNDERPLLSMSMNDYSVGSSSNNNPYKNSIKEEKFGFQSSSNTLVDDKNLVKDIELVGVASAAARPSFELKPPPGRVRNGVLPLKPPPGRPDLLPPEPQSIKPSDNPIVPPPSPPPPPPPTPPKPSNVGPPPPSSGPQPPPLPPPRAKPGPRPPPPPKSGVGPPRAPPSFGPKVAKIQGESGANSEGEVNAPKAKLKPFFWDKVQANSDQTMVWNQIKAGSFQFNEEMMETLFGYTTMPVDKSKGQQKKMASSQAASPQYIQIIDSKKAQNLSILLKALNVTIEEVCDALLEGNELPTEFLQTLLKMAPTTEEELKLRLFNGNLAQLGPADRFLKALVDIPFAFKRMEALLYMGTLQEELIATRDSFAILEVACKNLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAARMAKESHSFSSIKTDDLLEDISYESEDQYRELGLQVVSRLSSELENVKKAAALDADGLIGTTSRLGHGLIKTKEFVNKDLSNIEDDKGFHETVKSFIEKAEVDVMSLLEEEKKIMALVRSAGDYFHGDSGKDEGLRLFIIVRDFLIMLDKVCKEIKNAPKKPIVKSVKQENSSHSKGSSSSETHPPPPNIRQRLFPAVTNKRMDDFSSDDESP 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1034 873 MobiDBLite consensus disorder prediction 142 179 - -
Ssu8g1034 873 MobiDBLite consensus disorder prediction 823 873 - -
Ssu8g1034 873 PANTHER FORMIN-RELATED 3 143 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu8g1034 873 PANTHER FORMIN-RELATED 326 871 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu8g1034 873 SMART it6_source 400 823 IPR015425 -
Ssu8g1034 873 ProSiteProfiles Formin homology-2 (FH2) domain profile. 400 834 IPR015425 -
Ssu8g1034 873 PANTHER FORMIN-LIKE PROTEIN 3 143 - -
Ssu8g1034 873 PANTHER FORMIN-LIKE PROTEIN 164 321 - -
Ssu8g1034 873 PANTHER FORMIN-RELATED 164 321 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu8g1034 873 MobiDBLite consensus disorder prediction 293 384 - -
Ssu8g1034 873 MobiDBLite consensus disorder prediction 281 404 - -
Ssu8g1034 873 PANTHER FORMIN-LIKE PROTEIN 326 871 - -
Ssu8g1034 873 SUPERFAMILY Formin homology 2 domain (FH2 domain) 324 820 - -
Ssu8g1034 873 MobiDBLite consensus disorder prediction 826 847 - -
Ssu8g1034 873 Pfam Formin Homology 2 Domain 402 808 IPR015425 -
Ssu8g1034 873 Gene3D Formin, FH2 domain 405 843 IPR042201 -
Ssu8g1034 873 MobiDBLite consensus disorder prediction 142 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1034 Ssu-Chr8 17730879 17737920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1034 404 864 FH2 protein (formin) Gene Family AT5G54650 67.241 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1034 - - gmx:100782988 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1034 8 17730879 17737920 Ssu8g1034 8 17730879 17737920 ECH
Ssu8g1034 8 17730879 17737920 Ssu3g1978 3 64899771 64905609 PCT