Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1029 ATGGTTTCCCCGGAAAGCAGCAGTTGGATCTTCGATTACCCGTTGATCGACGATATTCCCATCGGCGACAACTCCTTCACCGTCTCCGCTTCCGCCTTCTCGTGGCCCCCACCCCCCTCCAATGTCGGTCTTGAAATTGATGGTTCGCTGGGGGATTCTGATGGCCTCAAAGATCCTGCTTTGAAGAAGAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCTAAGGCATGTCGGGAGAAGCTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCCTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTTTGATTGATGCTGTCCGAATGGTGACACAGATGCGGGACGAAGCCCAGAAGCTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAACCTGCTTTCTTGCCACCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAGTTGGTGCCTTTTATCAGTTATCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCCGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 693 0.5079 MVSPESSSWIFDYPLIDDIPIGDNSFTVSASAFSWPPPPSNVGLEIDGSLGDSDGLKDPALKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQMRDEAQKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLELQVKSMNAQPAFLPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1029 230 SMART finulus 77 128 IPR011598 GO:0046983
Ssu8g1029 230 CDD bHLH_AtILR3_like 76 151 - -
Ssu8g1029 230 MobiDBLite consensus disorder prediction 41 77 - -
Ssu8g1029 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 146 IPR036638 GO:0046983
Ssu8g1029 230 Coils Coil 119 174 - -
Ssu8g1029 230 PANTHER BHLH TRANSCRIPTION FACTOR 1 230 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Ssu8g1029 230 Gene3D arf6 gtpase in complex with a specific effector, jip4 121 175 - -
Ssu8g1029 230 CDD bZIP 137 169 - -
Ssu8g1029 230 Gene3D - 63 120 IPR036638 GO:0046983
Ssu8g1029 230 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 230 - -
Ssu8g1029 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983
Ssu8g1029 230 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1029 Ssu-Chr8 17673224 17675324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1029 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.293 1.19e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g1029 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1029 - - gmx:100801742 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1029 8 17673224 17675324 Ssu8g1029 8 17673224 17675324 ECH
Ssu8g1029 8 17673224 17675324 Ssu3g1983 3 65041425 65044907 PCT