Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1017 ATGTCTGAATTAGACGCACAGATTCCTACTACCTTCGATCCTTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAGGAGTATGTGCATATTCGTATACAGCAGCGAAATGGTAGAAAAAGCTTGACAACTGTTCAGGGTTTGAAGAAGGAATTCAGCTATAACAAGATACTTAAAGACCTTAAGAAAGAGTTCTGTTGCAATGGTACAGTTGTTCAGGACCCAGAACTAGGACAGGTTATTCAACTTCAAGGTGATCAGAGGAAGAATGTTTCTACCTTCCTAGTACAGGCTGGTATTGTGAAGAAAGAGCACATTAAGATTCATGGTTTCTGA 342 0.4123 MSELDAQIPTTFDPFAEANAEDSGAGSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1017 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Ssu8g1017 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Ssu8g1017 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
Ssu8g1017 113 MobiDBLite consensus disorder prediction 1 26 - -
Ssu8g1017 113 PANTHER PROTEIN TRANSLATION FACTOR SUI1-LIKE PROTEIN 1 113 - -
Ssu8g1017 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Ssu8g1017 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Ssu8g1017 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Ssu8g1017 113 Gene3D - 1 113 - -
Ssu8g1017 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1017 Ssu-Chr8 17321134 17322819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1017 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 89.381 2.00e-75 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1017 K03113 - jre:108983673 227.639