LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g1015	aTGGAAACTACATTTAAGAAGCCAGCTTCCTCGTCCCCAACAAAAATAATGCTAATAACAACAACGACATATCTGTTGCTTCTTGCGAGTTTTGAGGTTTGTCGCGGCCAGCAGTTCGGGGGCGGAAAGGCGCCGCCGCGCATGAAGGAGCTGGACGGCTGCGACGGCGTGTTCCTCACGTACGCCCTCCTGGGGCGCGAGAAGGAGTACCCGCACGTGAAGAACGTGTCGAAGCAGGCGTGGGCGTTCAAGGCGGAAGCGTCCCTGACGAACGTCGGGGACGAGAAGCTGCAAGGCTGGAAGATGTTCGTCCGGTTCCAGCACCGGGAGATTCTGGTGTCCGCCGACGGCGCCGTCCTCCTCGACGCCGGCGACTTCCCGGCGGAGGTGGGGAACGGAACCACCCTCTCCGGGACCGCCGTCTCGGACTTGAAGACCGCCATCGAAACCGCCGGTGATATTAACCAGATGAGTGCGAGGATTCAGATCCTCGGGACGCAGTTTGGGCTCGGCGCTGGGGCTACGCCAATGCCTAAAACTATTCACCTTGTTAATGATGGATTCAAATGCCCCGCGCCTAGTCGTCAAGCCACGAGAATGTTCGTATGCTGCAGAAAGGACCCCAGAGTGAAGGCAAAGCTAGCGAAGAAAACCAAGTACCCTCCCCGTCGCAATGGAGACCTAACCATAGCATACGACGTGCTTCAATCCAACACGAACAACTACTACGCGCAGGTGACAATGGACAACAACCACCCACTGGGTCGTCTTGATCACTGGAACTTAACATGGGAATGGCAAAAGGGAGAGTTCATATACTCCATGAAAGGAGCCTATGCTCGCATAAAGGACCCTTCTGAGTGCTTGTATGGCCTCGCTGGAAAATACTACAAGGACATGGATTTCTCACAAGTTGCAAACTGTCAGACAAAGCCAATCCTCTCTGACCTCCCAGCCGAAAGAGCAGAGGATGAGAAGGTTGGGAAACTCCCCTGGTGCTGTAGGAATGGCACTGTTTTGCCTCCAATCATGGACAAGAACAAAGCCAGGTCAATTTTCCAGTTGCAAGTGTTCAAGATGCCACCTGACACCGACAACAGAACCTCCCTCACTCCCCCTATAAAGTGGAACGTCGATGGTGTCATCAATCCACAGTACAAATGTGCGGCCCCAGTTAGGGTTGACCCTCAGGTGTTCCCTGACCCAAGCGGACTCAAAGCCATCACCACAGCTGTTGCCAGCTGGCAAATTGTTTGCAACATCACCAAACCCAAGCCTCAGGAAACCCGTTGCTGTGTCTCATTCTCATCGTTCTACAACGAATCAGCCATCCCTTGCAACACGTGTGCATGCGGCTGCGATGACACGAGGAAGTGCAGCTCCAAGGCCTCTCCGTTGCTTATTCCAGCAGAAGCTCTTCTTGTCCCTTTTGTCAACAGGACCCTGAAGGCACGTGCGTGGGCCAAACTCAAACACTTGCACGTGCCTAGCAGGCTTCCCTGCGGAGATAACTGCCCCGTCAGCATCAACTGGCACGTGAATTCGGATCACAAGGAAGGATGGACCGCTAGGATCACGCTTTTCAACTGGGAGGACTATGCCTTTGATGATTGGTTCACGGCCGTTGAGTTGAAGAGGACTTTTGAAGATTTTCAAGACGTGTATTCCTTCAATGGGACGAGAATTCCGGGTCTCAAAACCGTCTTCTTCGAAGGCCTAAAGGGTTTGAACTACTTGGCCGGAGAGACCAATGGAACCCGCGCTGGGGACCCAAGGGTGCCAGGGAAACAACAGTCTGTGGTTTCTTTCAGCAAGAAGCACTTAAAAGACTTTGATGTTACACGTGATGGGTTCCCCACTAAGGTGTTCTTCAATGGACACGAGTGTGCACTTCCTCCAATTAGACCTGCCAAAAGTTTGGGGCATAAATCTTCCATCGGCGTCATTTCAGTCATTTTCACAGCGTTTGTGACTTTCTTGATGATGACAGAGCGTTTTTAA	2001	0.5267	METTFKKPASSSPTKIMLITTTTYLLLLASFEVCRGQQFGGGKAPPRMKELDGCDGVFLTYALLGREKEYPHVKNVSKQAWAFKAEASLTNVGDEKLQGWKMFVRFQHREILVSADGAVLLDAGDFPAEVGNGTTLSGTAVSDLKTAIETAGDINQMSARIQILGTQFGLGAGATPMPKTIHLVNDGFKCPAPSRQATRMFVCCRKDPRVKAKLAKKTKYPPRRNGDLTIAYDVLQSNTNNYYAQVTMDNNHPLGRLDHWNLTWEWQKGEFIYSMKGAYARIKDPSECLYGLAGKYYKDMDFSQVANCQTKPILSDLPAERAEDEKVGKLPWCCRNGTVLPPIMDKNKARSIFQLQVFKMPPDTDNRTSLTPPIKWNVDGVINPQYKCAAPVRVDPQVFPDPSGLKAITTAVASWQIVCNITKPKPQETRCCVSFSSFYNESAIPCNTCACGCDDTRKCSSKASPLLIPAEALLVPFVNRTLKARAWAKLKHLHVPSRLPCGDNCPVSINWHVNSDHKEGWTARITLFNWEDYAFDDWFTAVELKRTFEDFQDVYSFNGTRIPGLKTVFFEGLKGLNYLAGETNGTRAGDPRVPGKQQSVVSFSKKHLKDFDVTRDGFPTKVFFNGHECALPPIRPAKSLGHKSSIGVISVIFTAFVTFLMMTERF	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g1015	666	Pfam	COBRA-like protein	242	422	IPR006918	GO:0010215\|GO:0031225
	Ssu8g1015	666	PANTHER	COBRA-LIKE PROTEIN 10	13	665	-	-
	Ssu8g1015	666	PANTHER	COBRA-LIKE PROTEIN 7	13	665	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g1015	Ssu-Chr8	17306772	17309919	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g1015	45	664	COBRA Gene Family	AT3G20580	60.064	0.0	790

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g1015	-		-	gmx:100789175	1163.67