Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1013 ATGGCTACCATCATTTTAAGGTCTAATGAAATAGTTCATGCCTTGGGCTTGCTCTGTATCTTGCAGTTGGTGCACAAGCGTGATGCCTATGAATTCGTAGTTGGAGGCCAAAAGGGTTGGAGTGTCCCAAGTGACCCCAATTCCAACCCTTACAATCAATGGGCCCAAAAGAGCCGATTTCAAATAGGAGACTCCCTAGCGTTCAATTACCCTTCTGGCCAAGACTCGGTGACTCAAGTAAATAGCCAAGACTATGCCAATTGCAACACTGATGCATATTCTCAAAAATTCTCTGACGGCCACACAACCATTAAGCTCAACCAATCAGGGCCTCACTTCTTCATCAGCGGAAACAAAAACAGTTGTCTCAAAAATGAGAAGCTGGTGGTGATTGTACTGGCTGACAGGAACAACAGAACCACAAACACCAACCAAACAAGCACTGCTTCTCCCTCTCGTTCTCCTTCACATACAACAGAGTCATTAGCTCCTTCACCAGCACCAGCTCAGGAAGTGTTTCCATCTCCACCTTCAGGGACTGTGGTGACTCCAGCACCTTCTCAGCAAGAGGCTCCTTCTCCACCATCAGGGACTGAGGGCCCAAACTCAACTCCAGCTCCGGTTAGTGAtcaacctcctcctccttctccttctaaatCTAATGCTGCTTCTTCAATCTTGGTCTCCTTTGCTGGTTCTGTTGGAGCATTCATGGCTTCAGTTCTGGTTTTTTCTTTCTAA 741 0.4507 MATIILRSNEIVHALGLLCILQLVHKRDAYEFVVGGQKGWSVPSDPNSNPYNQWAQKSRFQIGDSLAFNYPSGQDSVTQVNSQDYANCNTDAYSQKFSDGHTTIKLNQSGPHFFISGNKNSCLKNEKLVVIVLADRNNRTTNTNQTSTASPSRSPSHTTESLAPSPAPAQEVFPSPPSGTVVTPAPSQQEAPSPPSGTEGPNSTPAPVSDQPPPPSPSKSNAASSILVSFAGSVGAFMASVLVFSF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1013 246 ProSiteProfiles Phytocyanin domain profile. 30 134 IPR003245 GO:0009055
Ssu8g1013 246 PANTHER BLUE COPPER PROTEIN 5 245 IPR039391 GO:0009055
Ssu8g1013 246 SUPERFAMILY Cupredoxins 29 133 IPR008972 -
Ssu8g1013 246 MobiDBLite consensus disorder prediction 139 222 - -
Ssu8g1013 246 Gene3D - 30 146 IPR008972 -
Ssu8g1013 246 CDD OsENODL1_like 30 133 IPR041846 -
Ssu8g1013 246 MobiDBLite consensus disorder prediction 182 197 - -
Ssu8g1013 246 MobiDBLite consensus disorder prediction 198 219 - -
Ssu8g1013 246 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 5 245 - -
Ssu8g1013 246 Pfam Plastocyanin-like domain 40 124 IPR003245 GO:0009055
Ssu8g1013 246 MobiDBLite consensus disorder prediction 139 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1013 Ssu-Chr8 17285465 17287604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1013 11 209 Phytocyanin Superfamily AT3G20570 47.000 4.24e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1013 - - gmx:100788637 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1013 8 17285465 17287604 Ssu8g1013 8 17285465 17287604 ECH