Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1009 ATGGGTGATGAAGGAATGCACGATAGTCAAATGAGAGTAGATATTCCAGATGTGATCTACAAgAATGATACCTCACAAAATAATAATGGCAGTGGATCCATGGCATTATCCACAGACGTGATTATGGGTATTGGACTCAACATGCAACGAGCCAGTGACCTTCTTTTCGGATTCTCAATATATGCTGAGCCaaccaaaactaaaatcataGGGTATTCATGTTCAGCTATGGATGAGTTGTCAAAGATAGGCATTGCAGGGAAACCTTTATGGCAACCTCAGACAAACAATAGATATGAGATCTTAAATGATATTGAATATTTGAGGCAATTTGGTCAGGTAGATACAACGCTAAGGGAGATTGTTAAGTTGATTGAGGTTGGAGAGCCTCAAAATTTACCTAGCTTTGACTCATATCTAACAGAGCAACCAACATTAAAGACAACTCCGAGAGTAGCTCTACAAACTGAATCTTCACGAGATATGGCATATATTAAGATGACTCCAATCAGCATTGTTGAATTACTTATGGATGTGAACCAATGGTCGAGTGTATTTTACAATATTGTCTCAAAAGCAACAATCGTAGGTACTTTGTTAGGAGTGGAAGGAAGCTATGATGACAAATTGCACGTGATGAGTGCAGAACTTCATTTGCCTACTCCTGTTGTACCAACTAGGGAGTGTTATTTTGGAAGGTACAGCAAGCAGTTGTCTCATAACAAATGGGGGGTTGTTGATGTTTCATTGGATAAGTTTATTTCTTCTCCAACAAGTAATTTTCTGAAAAGACCATCGGGCTGTTTAATTACCGGAATGCCTAATGGATACTCTAAGGTTGTATGGGTCGAGCATGTAGAAGTAGACCATAGTGATTTGGACAATTATTCCCAGCAGCTAGACAACTCCACTCTAGCTTTTTGTGCAACTCGATGGCTTAATTCCTTAGTTCGATACAGTGAATGGTCTCAAACCCTAAAAGCAACAACATTTGTCGCAGATGAAGGGGTTCGTATACCCCAAACTGGGAGGACAAGTTTCTTAAAACTGGCGGATAGAATGATGAGAATCTTTTGTGCAAATATCAGTGCTACAACAGACAATCCATGGATGCAAATACCTACTTATCCTGGTTCCAAAGAAGTGAGAGTCATGGTGCAGAATAATATGGAAGATACTGCAACGCCTCCTGGTACATCTGTGGTTTTCACTACTTCTCTTTGGCTTGAAGTCTCCCCAAATCGATTGTTCAACTTCCTTCGTCATGAGAATTCCAGAACCAAGTGGGATTCGCTTTCACGTAGACTCACTATTCGAGAATTCGCGTCCATGCTTAAGGGTGAAAATCCAGGGAATCGTGTTTCCCTGATGCGAGCAAATACCTCACAGGGCGAGCTTGTAATATTTTATCTGCAAGAGAGTTACACAGACTCAACAGGTTCCTACGTGGTATATGCTCCACTAGACGAGTTAGCTGTCTCAGCTCTTGCAAATGGATCCGACCCTGACAAAGTGATGATCCTACCATCAGGGTTTAGTATACTTCCTGGACGGTTGCCAGGAGAGGAAGATAGAGGCACTGCAAGTTTTCTAACGGTTGCATTCAATATAGTTGAAAGTGCCACAAGTAGGCCAGTTATCCCTCCTGAATCAGTTGAAaccatatataaaatcattacagATACTGTTAGCTCTATAAAGGATACAGTGCTGTTTCATAATCATCGCAACTATTGGACGGAGGATTGA 1749 0.4031 MGDEGMHDSQMRVDIPDVIYKNDTSQNNNGSGSMALSTDVIMGIGLNMQRASDLLFGFSIYAEPTKTKIIGYSCSAMDELSKIGIAGKPLWQPQTNNRYEILNDIEYLRQFGQVDTTLREIVKLIEVGEPQNLPSFDSYLTEQPTLKTTPRVALQTESSRDMAYIKMTPISIVELLMDVNQWSSVFYNIVSKATIVGTLLGVEGSYDDKLHVMSAELHLPTPVVPTRECYFGRYSKQLSHNKWGVVDVSLDKFISSPTSNFLKRPSGCLITGMPNGYSKVVWVEHVEVDHSDLDNYSQQLDNSTLAFCATRWLNSLVRYSEWSQTLKATTFVADEGVRIPQTGRTSFLKLADRMMRIFCANISATTDNPWMQIPTYPGSKEVRVMVQNNMEDTATPPGTSVVFTTSLWLEVSPNRLFNFLRHENSRTKWDSLSRRLTIREFASMLKGENPGNRVSLMRANTSQGELVIFYLQESYTDSTGSYVVYAPLDELAVSALANGSDPDKVMILPSGFSILPGRLPGEEDRGTASFLTVAFNIVESATSRPVIPPESVETIYKIITDTVSSIKDTVLFHNHRNYWTED 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1009 582 Pfam START domain 141 318 IPR002913 GO:0008289
Ssu8g1009 582 SUPERFAMILY Bet v1-like 159 321 - -
Ssu8g1009 582 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN ROC2 49 572 - -
Ssu8g1009 582 SMART START_1 113 322 IPR002913 GO:0008289
Ssu8g1009 582 ProSiteProfiles START domain profile. 62 325 IPR002913 GO:0008289
Ssu8g1009 582 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 572 IPR042160 -
Ssu8g1009 582 SUPERFAMILY Bet v1-like 343 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1009 Ssu-Chr8 17178828 17190492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1009 48 570 Homeobox Transcription Factor Family AT4G04890 41.252 3.03e-121 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1009 K09338 - jre:108992281 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1009 8 17178828 17190492 Ssu8g1009 8 17178828 17190492 ECH