Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0999 ATGACAGAAACGGGAACAGAGAATGTCAAAGCAATAGTTctagatgaaaaagaagatatttCCGAATGTAGTGTTGATGGATTGTCAAAAATGAAGAACCTTACGTTACTCATactatatcataaaaatttttcAGGAAGCCTCAATTTTCTCTCTTCCAAGCTGCGATATCTTTTGTGGCATGATTATCCTTTTGCTTCTTTGCCATTATATTTTACAGCGTCTGATCTTGTGGAATTGAATATGCCTAATAGCAGCATGGAACGTGTATGGGAAGGCCGAAAGAGTTTCCCCTGTTTGAAAAGAATGGATTTGAGCAACTCCAAATATCTTATAGGGACTCCAGATTTTACTCGAATCACAAAACTTGAGCGGCTGGATCTTTCTGGATGCACAAATTTGTCACGGGTCCATTCATCAATTGGATTTCTTAAGTCACTTGCTTTCTTGAATTTACGAAATTGTCGCAAGCTAGTTAGCATCGATTTTGACAGTGTAGTTAATATGATTTCTTTGAGAGTTCTGCATCTCTCGGGTTGCACTAAACTTGAAAAGACGCCAGATTTTACAAGGGCAACAGATCTTGAGTACCTTGACATTGATGGATGTACAAGTTTATCCTCGGTTGATAAATCTATTGGAGCCCTTGCAAAGCTTACATTCTTGAGTTTGAGAGACTGCAAAATTCTTGAGAGTATACCTAGCGACATTAATTCCATGGTATCTCTTCAGAGTCTAGATTTATGTGGCTGTTCGAAACTTAGGGATCTGCCCCTATCCCGCCATTTGGAATCTTTGATTTTTCTGGACGTAGGCTTTTGCGATCTACATGAAGTACCTGATGCTATTGGAGAGTTAAGTTGTGTAGAAAGACTGAATCTACAGGGGAACAACTTTGTTTCAATACCTTCTTCCATCAAGAAGCTACATTGTCTAGCATATTTAAACTTGTCTCATTGCCATAAGCTTAAAGCTTTGCCTAAACTTCCATCAATAAGTGCTTCATCAGTGGGAAGGTATTTTAAAACGGTATCCGGATCTCGTGATCATAGGTCAGGGTTATATGTTTTTGATTGCCCCAAGATGGTTAATGCGTTCAGCAATGGCATGGAACTTGCATGGCTAACAAGACTAATTGAGGAACCCTATCATTTTCGGTGTGGTTTTGACACTGTTGTTCCTTGGAAAGTGCCTTCGATTCCACGGTGGTTCAATCAAGAAGGATTTAGCGGAGATTCAGTTATAAGGGTAAAGCACTTTAATATGGATGACAACTGGATTGGCTTTGCCTTTTGTGTTCTATTTGAGGTAAATACTCGTCCTGTGGTTTCTTCTTCTCCCCCGCCgcatttttatcttgttttgaaAGTGAACACACAGAAGAATACTTTGATATGCCACTTAATTTGGAGCTGGACAACATTGATGGATCAAAATATCTTGGATCATTTATATCTCTCGGCAGCACTGTCATTTTGTGAAAACTGGGTCGCATATCACATTTAA 1506 0.3805 MTETGTENVKAIVLDEKEDISECSVDGLSKMKNLTLLILYHKNFSGSLNFLSSKLRYLLWHDYPFASLPLYFTASDLVELNMPNSSMERVWEGRKSFPCLKRMDLSNSKYLIGTPDFTRITKLERLDLSGCTNLSRVHSSIGFLKSLAFLNLRNCRKLVSIDFDSVVNMISLRVLHLSGCTKLEKTPDFTRATDLEYLDIDGCTSLSSVDKSIGALAKLTFLSLRDCKILESIPSDINSMVSLQSLDLCGCSKLRDLPLSRHLESLIFLDVGFCDLHEVPDAIGELSCVERLNLQGNNFVSIPSSIKKLHCLAYLNLSHCHKLKALPKLPSISASSVGRYFKTVSGSRDHRSGLYVFDCPKMVNAFSNGMELAWLTRLIEEPYHFRCGFDTVVPWKVPSIPRWFNQEGFSGDSVIRVKHFNMDDNWIGFAFCVLFEVNTRPVVSSSPPPHFYLVLKVNTQKNTLICHLIWSWTTLMDQNILDHLYLSAALSFCENWVAYHI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0999 501 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 263 486 - -
Ssu8g0999 501 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 183 259 - -
Ssu8g0999 501 Gene3D Ribonuclease Inhibitor 262 336 IPR032675 -
Ssu8g0999 501 Gene3D Ribonuclease Inhibitor 163 261 IPR032675 -
Ssu8g0999 501 SUPERFAMILY L domain-like 22 328 - -
Ssu8g0999 501 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 184 IPR044974 GO:0006952
Ssu8g0999 501 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 263 486 IPR044974 GO:0006952
Ssu8g0999 501 Pfam Leucine Rich Repeat 76 93 IPR011713 -
Ssu8g0999 501 Gene3D Ribonuclease Inhibitor 1 157 IPR032675 -
Ssu8g0999 501 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 183 259 IPR044974 GO:0006952
Ssu8g0999 501 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 20 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0999 Ssu-Chr8 16974089 16977271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0999 172 327 WRKY Transcription Factor Family AT4G12020 39.873 1.20e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0999 - - vra:106778604 593.193