Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0990 ATGCATCACCGTAGATTCACCCAACCAATATATGTGGCTGACCCAGATGAGCCCGAGCCCGCCTCAGAAGCTGGGCCTGCTTCTCCTTCTTCTGGTGAAGACACTAAAACTGAAGCACCATCGCccaagaaaagGAGGGAGACGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACATATCCACCGTCTGATTCATGGGCCTGGAGGAAGTACGGCCAAAAGCCCATCAAAGGCTCCCCTTACCCAAGGGGATACTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGAGAAGCCGCGTGGACCCCACAAAGCTCATAGTCACCTACGCCTACGAGCACAACCACTCCCTCCCCGTCCCCAAATCCCATTCCGCCGCCGCTTCCTCCGCCGCACCCGACGGCGAAGCCGCCGCCGCCGCGTCGCCGACCGAGTCCGCCGCCGTGATTCCGGCGGCGGAGGAGCTGACGGTGTTCGCGGCGCACCCCGATCTCGAACTCGCCGGCGACGCGGCGGTCCTGCTCAGCAGCCACCACCACTTCGGGTGGTTCGATGACGTGGCATCCACCGGCGTTCTCGAAAGCCCCATCTGCGGCGAGGTGGATGACGTGGCGGTGCCGATGAGGGAGGAGGACGAGTCGCTGTTCGCCGACCTCGGCGAGTTGCCGGAGTGCTCGGCGGTTTTCCGGCGAGGGAATATTCCGAGGTCCAGCGCTATTCGGTGCGGCGGCATCCCAGGATAA 786 0.6132 MHHRRFTQPIYVADPDEPEPASEAGPASPSSGEDTKTEAPSPKKRRETKKRVVTIPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAYEHNHSLPVPKSHSAAASSAAPDGEAAAAASPTESAAVIPAAEELTVFAAHPDLELAGDAAVLLSSHHHFGWFDDVASTGVLESPICGEVDDVAVPMREEDESLFADLGELPECSAVFRRGNIPRSSAIRCGGIPG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0990 261 SUPERFAMILY WRKY DNA-binding domain 68 133 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g0990 261 MobiDBLite consensus disorder prediction 1 79 - -
Ssu8g0990 261 MobiDBLite consensus disorder prediction 133 156 - -
Ssu8g0990 261 PANTHER OS01G0750100 PROTEIN 17 250 - -
Ssu8g0990 261 Pfam WRKY DNA -binding domain 74 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0990 261 Gene3D WRKY domain 60 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g0990 261 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 250 IPR044810 GO:0003700
Ssu8g0990 261 ProSiteProfiles WRKY domain profile. 73 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0990 261 SMART WRKY_cls 72 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0990 Ssu-Chr8 16801109 16803324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0990 1 248 WRKY Transcription Factor Family AT3G58710 50.575 2.86e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g0990 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0990 - - gmx:100170680 412.535