Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0986 aTGGCCTCTATGCCGTTGGGGCCGCAGCACCTTCAACCACAGCAAGTGGCAGCTCCGCCGCAACAACCGTCGCAAGCGGAGAATGACGCGATGAAGGTGGACTCTCGCGGCGGCTCCGACGCGGCGAACGATAAGGAAATGGCAGCTTCCGTCGCAGAGGGTAATGATGCAGTCACTGGTCACATAATCTCAACCACAATTGGAGGCAAAAATGGTGAACCTAAACGAACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAGGTGCTTGGAGACGGGGGAGGCAGTGGCTATAAAAAAGGTCTTGCAGGACAGGCGATACAAAAACCGTGAACTGCAGTTAATGCGCTTGATGGATCACCCAAATGTAGTTTCCCTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACAATGTTCCGAGTTATAAAGCATTACAGTAGTATAAACCAGAGAATGCCCCTAATCTATgtgaaattatatacatatcaaATCTTTAGGGGACTCTCATATATCCATACTGTACCAGGAGTTTGCCATAGGGATGTGAAGCCTCAGAATCTTTTGGTTGATCCACTCACTCACCAAGTTAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTGAAGGGTGAATCaaacatttcatatatatgttcACGGTACTATCGGGCCCCAGAACTAATATTTGGTGCGACAGAATATACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGcctTTGTTCCCAGGAGAAAATCAGGTCGACCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCTACTCGAGAAGAAATTAAATGCATGAATCCTAGTTATACAGATTTCAGATTCCCCCAAATTAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATAGACCTTGCATCAAGGCTTCTCCAATATTCACCAATACTTCGTTGCAGTGCACTGGAAGCATTGGCACATCCTTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGACTACCTAATGGTCGTCCACTGCCTCCactttttaactttaaacagGAAGTATGTATCTAA 1179 0.4385 MASMPLGPQHLQPQQVAAPPQQPSQAENDAMKVDSRGGSDAANDKEMAASVAEGNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQARCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSRDELFLNLVMEYVPETMFRVIKHYSSINQRMPLIYVKLYTYQIFRGLSYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIKCMNPSYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPILRCSALEALAHPFFDELREPNARLPNGRPLPPLFNFKQEVCI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0986 392 ProSitePatterns Protein kinases ATP-binding region signature. 86 110 IPR017441 GO:0005524
Ssu8g0986 392 MobiDBLite consensus disorder prediction 1 47 - -
Ssu8g0986 392 SMART serkin_6 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0986 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Ssu8g0986 392 Pfam Protein kinase domain 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0986 392 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 26 390 - -
Ssu8g0986 392 MobiDBLite consensus disorder prediction 8 29 - -
Ssu8g0986 392 Gene3D Transferase(Phosphotransferase) domain 1 160 391 - -
Ssu8g0986 392 PANTHER OS02G0236200 PROTEIN 26 390 - -
Ssu8g0986 392 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0986 392 Gene3D Phosphorylase Kinase; domain 1 65 159 - -
Ssu8g0986 392 CDD STKc_GSK3 75 367 IPR039192 -
Ssu8g0986 392 SUPERFAMILY Protein kinase-like (PK-like) 79 386 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0986 Ssu-Chr8 16753879 16758235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0986 42 369 MAP Kinase Gene Family AT3G59790 33.894 2.59e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu8g0986 Pkinase 2.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0986 K14502 K00924 gmx:100806839 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0986 8 16753879 16758235 Ssu8g0986 8 16753879 16758235 ECH