Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0984 ATGGACGAAGATTACGGATACAGAAGGAAGGCGAAGATTGCACTCGTCTTCATCTTGGTGCTCGCTTCCCTCGCCGTCTTTGCTTTGCTCGTTGCCTTCGCTTACTACTGCTACATCCTCAACAAGGTCTCTAACCGCCGCAAAAGCCTCAAAAAAGttgAAGACGCTAACCTTAATGAGAAAAGTGACTTTGCAAATCTGCAAGTTGTTGCTGAGAAAGGACTTCAGGTGTTCACTTTCAAGCAGCTGCATTCTGCAACAGGGGGCTTCAGCAAGTCAAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATGATGGCAGGAAAGCTGCAATTAAATTCATGGATCAGGCAGGAAAGCAAGGAGAAGAAGAATTTAAAGTAGAGGTGGAATTGCTAAGTCGGTTGCATTCTCCATATCTGCTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAATTTATGGCAAATGGTGGACTGCAGGAACATCTTTATCCTGTCAGCAATTCTATTGTTTCACCCATGAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAAGGGTTTGGaatatcttcatgaacatgtcaGTCCCCCAGTGATTCACAGAGATTTTAAGAGCAGCAACATCCTCTTGGATAAGAAATTTCATGCCAAAGTTTCTGATTTTGGATTGGCAAAGCTTGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGAGTTTTGGGCACCCAGGGATATGTTGCCCCTGAATATGCACTAACAGGACATTTAACAACAAAATCGGATGTGTACAGTTATGGTGTTGTACTTTTGGAGCTGCTTACTGGCCGAGTGCCAGTTGATATGAAGAGACCTCCAGGGGAAGGTGTTCTTGTTTCTTGGGCTTTGCCCCTTTTGACGGATAGAGAAAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAGTACTCTATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCAGCAATGTGTGTGCAACCGGAGGCAGATTATCGGCCTCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTGAAGACTCAAAGGTCCCCCTCAAAGGTAGGCAGCTGCTCTAGTTTCCATTCCCCTAAGCTGTCCCCCGGCCCAACATCCAGTTAA 1194 0.4481 MDEDYGYRRKAKIALVFILVLASLAVFALLVAFAYYCYILNKVSNRRKSLKKVEDANLNEKSDFANLQVVAEKGLQVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKAAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVSNSIVSPMKLDWETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPSLEGQYSMKEVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSPSKVGSCSSFHSPKLSPGPTSS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0984 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Ssu8g0984 397 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Ssu8g0984 397 PANTHER OS07G0227300 PROTEIN 5 389 - -
Ssu8g0984 397 Gene3D Phosphorylase Kinase; domain 1 50 165 - -
Ssu8g0984 397 Pfam Protein kinase domain 91 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0984 397 MobiDBLite consensus disorder prediction 375 397 - -
Ssu8g0984 397 SUPERFAMILY Protein kinase-like (PK-like) 72 366 IPR011009 -
Ssu8g0984 397 PANTHER OS01G0750732 PROTEIN 5 389 - -
Ssu8g0984 397 CDD STKc_IRAK 96 369 - -
Ssu8g0984 397 Gene3D Transferase(Phosphotransferase) domain 1 166 382 - -
Ssu8g0984 397 ProSiteProfiles Protein kinase domain profile. 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0984 Ssu-Chr8 16707239 16711984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0984 1 392 Receptor kinase-like Gene Family AT3G58690 77.551 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu8g0984 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0984 - - gmx:100804893 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0984 8 16707239 16711984 Ssu8g0984 8 16707239 16711984 ECH