Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0978 ATGGAGGAGACACGAGAAGATGCAGGGCCGGCAGAGCAAGGGCCATCTAATGTGTCGTGGTGGCCTTcagattttgttgaaaagtttgGATCTGTTTCTTTGGGTTCTCAAGATGAGACCATAAGTAATAAAGAATCTCCTCGACATTTTGACGAAGATGTTTTGTCTTCTCAGAAAGCATCACAAACTCTCTGGCGCACTGGAGTGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAGGAACTTTTTGATAGTATTCCTACCTTGGACGAGCTTCATGCTTTGGCTGGAGAGGGTTTTAAGGCTGATATCATTCTTGTGGATtcagagaaagataaaaagctATCCATGTTAAAGCAATTGATTGTGGCATTAGTTAGAGGATTAAACTCAAATCCAGCTGCCATAATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAACGACCCAATGTGGAAAGTCCAGCAAAAGCTGCACTAGATGAAACCTCTCACATGTTTGAGAATCGAGGAGTTCAGATGCTGGGGCAAATAAAGCATGGTTCTTGCCGCCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACTGTTGATCTTGAAAGTAGGCTCATGGTGGGCTTGCCAAATGATGGAGCTATTGAATGTCAAGACTCTTACAAGCATATGTCTGTGATAGTTGTATTAAATTCTGTGGAAATGCTGGTTGATCTTATGCGATTTCCGGGCCAATTGTTACCACGATCAACCAAGGCAGTTTTTATGACTCACATTTCTGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCGCCATTAGAACCAAACAGCCCTTTATTTGGGGTGTCGGAGAGTGTTGAGAAGGAGGACAACCTCCAATTCCAAAGAAAATTTGAAGCATCTTCGAATGTATCAGGCCTTTCCTTGAGAAATATGATGTTACGATCAAATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAACATTGCTGCTGCATTTGGTCGGCGAAGTCGGAGAAAGGTCATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGGACGGTCCATGCTTAGTGGTGATAGGACAGCATTTAGAGATTTTGCTGATGACCAGGCTACATCAAGATCCAGCTATAGGTCAGATGGTGCATCCTCGTCAGAAGCTCGTAGGATACGAAGAAGAAGCATTAGCATTACACCAGAGATTGGAGATGATATCGTAAGGGCTGTACGGGCAATGAATGAAACACTGAAGCAAAATCGTCTCTTGAGAGAACGAGGGGATGATaactcattctcccattctccaAACAATAGTAGTAGTGATGCAAATCTTCAGAAAAATCGTGACCAAGGAACTTCACAAAAGGCAATGTCGTTACCATCTTCACCACATGATTATAGAGGTCAGGCTTCTGAGAGAAGTGGACCATCGAGATATGGAGTGAATGATGAAATGGAGTCGACTTGGAATAAAGTACTGGAATCTCCAATGTTCAATAATAAACCTCTGTTACCATATGAAAAATGGAATATTGACTTCTCTGAATTGACTGTTGGAACTCGCGTAGGGATTGGTTTCTTTGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTTCTGGAGCAAGATTTAACTGCTGAAAATATGGAAGATTTTTGCAACGAGATATCTATTCTGAGCCGGCTTCGACATCCTAATGTTATCTTGTTTCTCGGTGCATGCACAAAGCCTCCACGCTTGTCAATGGTTACAGAATACATGGAGTTGGGATCATTGTATTACTTGATACATTTGAGCGGTCAAAAGAAAAAGCTTAATTGGCGGAGAAGACTAAGGATGTTGCGTGACATATGCAAGGGTTTGATGTGCATACACCGAATGAAGGTTGTTCACCGTGATCTGAAAAGCGCAAATTGTCTAGTGAATAAGCATTGGACGGTgaaaatatgtgattttgggctttcaAGAATAATGACAGATTCTCCTATGAGAGATTCTTCGTCTGCTGGAACTCCAGAATGGATGGCTCCTGAGCTTATTCGAAATGAACCATTCACAgaaaaatgtgatatatttaGCCTTGGGGTGATAATGTGGGAACTCTGCACCTTGAACAGACCATGGGAAGGCGTACCACCTGAGAGGGTGGTTTATTCCGTTGCAAATGAGGGTTCCAGATTGGAGATGCCAGAAAGCCCTCTAGGCAGGCTGATTTCAGACTGTTGGGCAGAATCTCATGAGCGGCCAAGTTGTGAGGAGATTCTTTCTCGTTTGGACATCGAGTACTCCTTGTGCTGA 2373 0.4096 MEETREDAGPAEQGPSNVSWWPSDFVEKFGSVSLGSQDETISNKESPRHFDEDVLSSQKASQTLWRTGVLSEPIPNGFYSVIPETRLKELFDSIPTLDELHALAGEGFKADIILVDSEKDKKLSMLKQLIVALVRGLNSNPAAIIKKIAGLVSDFYKRPNVESPAKAALDETSHMFENRGVQMLGQIKHGSCRPRAILFKVLADTVDLESRLMVGLPNDGAIECQDSYKHMSVIVVLNSVEMLVDLMRFPGQLLPRSTKAVFMTHISAGESDSAENDSCDSPLEPNSPLFGVSESVEKEDNLQFQRKFEASSNVSGLSLRNMMLRSNSSLSLSHSEPNIAAAFGRRSRRKVIAEQRTASSSPEHPSFRARGRSMLSGDRTAFRDFADDQATSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRERGDDNSFSHSPNNSSSDANLQKNRDQGTSQKAMSLPSSPHDYRGQASERSGPSRYGVNDEMESTWNKVLESPMFNNKPLLPYEKWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMELGSLYYLIHLSGQKKKLNWRRRLRMLRDICKGLMCIHRMKVVHRDLKSANCLVNKHWTVKICDFGLSRIMTDSPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYSVANEGSRLEMPESPLGRLISDCWAESHERPSCEEILSRLDIEYSLC 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0978 790 Gene3D Phosphorylase Kinase; domain 1 528 613 - -
Ssu8g0978 790 ProSiteProfiles Protein kinase domain profile. 535 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0978 790 CDD STKc_MAP3K-like 541 783 - -
Ssu8g0978 790 Pfam Protein tyrosine and serine/threonine kinase 536 783 IPR001245 GO:0004672|GO:0006468
Ssu8g0978 790 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g0978 790 MobiDBLite consensus disorder prediction 438 500 - -
Ssu8g0978 790 MobiDBLite consensus disorder prediction 387 402 - -
Ssu8g0978 790 MobiDBLite consensus disorder prediction 353 410 - -
Ssu8g0978 790 Gene3D Transferase(Phosphotransferase) domain 1 614 788 - -
Ssu8g0978 790 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 788 - -
Ssu8g0978 790 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 788 - -
Ssu8g0978 790 ProSitePatterns Protein kinases ATP-binding region signature. 541 562 IPR017441 GO:0005524
Ssu8g0978 790 SUPERFAMILY Protein kinase-like (PK-like) 509 783 IPR011009 -
Ssu8g0978 790 SMART serkin_6 535 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0978 790 MobiDBLite consensus disorder prediction 450 487 - -
Ssu8g0978 790 Pfam Ethylene-responsive protein kinase Le-CTR1 57 253 - -
Ssu8g0978 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0978 Ssu-Chr8 16588427 16608797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0978 1 790 MAP Kinase Kinase Kinase AT3G58640 70.646 0.0 1165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Ssu8g0978 PK_Tyr_Ser-Thr 9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0978 - - gmx:100803469 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0978 8 16588427 16608797 Ssu8g0978 8 16588427 16608797 ECH