Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0969 ATGGAAATGGAAGCTTTTGCCCCACAAAGGATAAGTGACTGTTTTCAAGTGAGATGTGGTGTAATTGGAAGTGGGTATGCTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTAGAGGCCCCTGTCAAATTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGCGTTGAAGCCTTGAAGAACCATAGTGAGGCAGAGCGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCACTGTCATCCCAGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAACGAATGCAGCACAAGCTAGTGAAGGCCTAATGATACCAAAGGACAATGATGAAATAAAAGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTCCCTTACTCAATCAGGGCATCACTATGTTGTGAATATAAACCCGGGTTATTGACTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAACAAGGGCAGAGATTGCAACTTTGGGAGGAAGGATGAAGAACGTGTTTGTGATAATTAGCAGCAAAGAACAAAATGTTGAAGATGCTGAATACCGTCAGTTTCTGGCAGGGTCTGTTCATCAAGCTCTAAGATCTGTGTTAGATAGATTTCCTGTTTCACAGGACATGTTAGAAAgcaggaagagaaggaggatttCTATATTCAGTTCTTCATCTATAGGAGATTTCTTGTga 750 0.4107 MEMEAFAPQRISDCFQVRCGVIGSGYASSSSLVLDKEKGELVEAPVKLERKGVSPERSVEALKNHSEAERRRRARINAHLDTLRTVIPGAKKLDKATLLGEVIRHLKELKTNAAQASEGLMIPKDNDEIKVEEQEGGLNGFPYSIRASLCCEYKPGLLTDIRQALDALHLMITRAEIATLGGRMKNVFVIISSKEQNVEDAEYRQFLAGSVHQALRSVLDRFPVSQDMLESRKRRRISIFSSSSIGDFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0969 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Ssu8g0969 249 PANTHER TRANSCRIPTION FACTOR BHLH30 1 249 IPR045847 GO:0003700|GO:0006355
Ssu8g0969 249 SMART finulus 66 115 IPR011598 GO:0046983
Ssu8g0969 249 Gene3D - 56 118 IPR036638 GO:0046983
Ssu8g0969 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 115 IPR036638 GO:0046983
Ssu8g0969 249 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
Ssu8g0969 249 SUPERFAMILY ACT-like 148 195 IPR045865 -
Ssu8g0969 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0969 Ssu-Chr8 16410050 16411776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0969 47 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.916 4.65e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0969 HLH 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0969 - - gmx:100783322 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0969 8 16410050 16411776 Ssu8g0969 8 16410050 16411776 ECH