Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0956 ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGTAAGGTTTACACTGCAAAGGGTCCTCGTGATCGCAGGGTTAGGCTATCAGCACACACAGCCATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGACAGACCCAGCAAGGCCGTGGACTGGCTCATCAAGAAGGCCAAGTCTGCCATTGACAAGCTCGCTGAGCTTCCTCCATGGCACCCTATTCCCCACACTGCAGATGCGGAGcacaacaataacaatgcaGGGTCAAGTGACATGGCCATTCAAGAACAATCTGAGTCTTCTGGCTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCCTGATAACCACCATTCAGCTTTCATGCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCTACCTCTTCCATCAATTTCCAAACCTACCCTCCTGATATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTCTCTCTTCACTCCTTCCAAGACCCTGGCCTGATTCATGGGCAGTCCCAAGCAGGTGCAAACCAAACACCTTCCAATGACCAGACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAGGCCAATTACCCCAGGATTTTGACTTGGAACAATGATGCAAGTACTACAGATATGAACAGAACCGGCTTCATGGTCAATTCACCAGCACTTCTCGGCCAAGGTGGTTCTGCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCATCAGAACATCATAAGTCACAACCAATTCAACATGCTTCCATCTTTGGCAGCAGGTTTCTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGTGAGGATGAGAGCCATGGAGTTGGTGCCAACAAgccatcatcttcttctcctaATTCTCATCACTGA 1026 0.4717 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWHPIPHTADAEHNNNNAGSSDMAIQEQSESSGYNFQLQRQLGEDPDNHHSAFMPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRILTWNNDASTTDMNRTGFMVNSPALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHKSQPIQHASIFGSRFLSDALPGFCIPARIQGEDESHGVGANKPSSSSPNSHH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0956 341 MobiDBLite consensus disorder prediction 96 118 - -
Ssu8g0956 341 MobiDBLite consensus disorder prediction 92 118 - -
Ssu8g0956 341 PANTHER TRANSCRIPTION FACTOR TCP4 2 341 - -
Ssu8g0956 341 MobiDBLite consensus disorder prediction 320 341 - -
Ssu8g0956 341 Pfam TCP family transcription factor 23 120 IPR017887 -
Ssu8g0956 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 341 IPR005333 GO:0003700
Ssu8g0956 341 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0956 Ssu-Chr8 16235130 16236155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0956 8 341 TCP Transcription Factor Family AT3G15030 43.609 1.14e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu8g0956 TCP 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0956 - - pvu:PHAVU_005G097200g 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0956 8 16235130 16236155 Ssu8g1195 8 21324589 21325998 ECH
Ssu8g0956 8 16235130 16236155 Ssu3g1732 3 52830795 52831915 ECH
Ssu8g0956 8 16235130 16236155 Ssu8g0956 8 16235130 16236155 ECH