Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0955 ATGAGTTACTTCGACGACCATGGCCCATTTGTCCGCGACCACAGCGACTTCAACAGGAGGATCCTGATCATGGCCATAGTTTCCCTATCGGGGGTCTTAGTTCTTGTCTTTGCACTTCATCTCTATGCCAGGTTTGTGCTGAGGCGTCAGTCTCGCCGCAGAGCCGCCATATACCAACTCAGCCTCAACGTGGCGCACGCTCGCGCCGAGCCGCCCAACGCGGGACTCGACCCTACCCTCATCACCGCGCTTCCCACGTTCCCCTTCAAGCGCCAACACGACGACGCCGCGGAGTGCGCCGTGTGCTTGAGCGTGCTGGAAGACGGAGAGCTGGTGAGGCTGCTTCCCAACTGTAAACACAGCTTTCACGTTGGTTGCATCGACACGTGGCTCGCTTCGCGCTCCACGTGTCCCGTTTGTCGAACCAAGGCCGAACCGGTCCGGCTCGAGCCGCAGCCGCGCGAGGGCCCCACCGGGTTGGGTCTCGATGGTGCACCGCCCACGGCTCCGCTCTTGTTTGAATGCGTGGAAGGCACTTCGGACGGTGCTAATGGTTCGCCTAAAATTAGTGGTTCCAATTCACGGTTGAGCTCGTTCCGAAGGATTCTTAGTAGGGAGAGATCGTCCCGGAGAATTCAACCTTCTAGCCATGATGATGTTGAACAAGATTTGGAGAGGCAGTGA 684 0.5833 MSYFDDHGPFVRDHSDFNRRILIMAIVSLSGVLVLVFALHLYARFVLRRQSRRRAAIYQLSLNVAHARAEPPNAGLDPTLITALPTFPFKRQHDDAAECAVCLSVLEDGELVRLLPNCKHSFHVGCIDTWLASRSTCPVCRTKAEPVRLEPQPREGPTGLGLDGAPPTAPLLFECVEGTSDGANGSPKISGSNSRLSSFRRILSRERSSRRIQPSSHDDVEQDLERQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0955 227 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Ssu8g0955 227 MobiDBLite consensus disorder prediction 183 199 - -
Ssu8g0955 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 148 IPR013083 -
Ssu8g0955 227 MobiDBLite consensus disorder prediction 177 227 - -
Ssu8g0955 227 CDD RING-H2_PA-TM-RING 98 141 - -
Ssu8g0955 227 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 15 227 - -
Ssu8g0955 227 SUPERFAMILY RING/U-box 91 146 - -
Ssu8g0955 227 Pfam Ring finger domain 98 141 IPR001841 -
Ssu8g0955 227 PANTHER RING FINGER DOMAIN-CONTAINING 15 227 - -
Ssu8g0955 227 SMART ring_2 99 140 IPR001841 -
Ssu8g0955 227 MobiDBLite consensus disorder prediction 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0955 Ssu-Chr8 16213186 16213869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0955 6 227 C3H Transcription Factor Family AT2G42360 50.000 6.04e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0955 K19038 - gmx:100780265 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0955 8 16213186 16213869 Ssu8g0955 8 16213186 16213869 ECH