Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0953 ATGGCGCAATTACCTCCCAAGATCCCAAACATGTCACCGAGTTGGCCGGACTTCTCTTCTCACCAGAAGATGCCATTGCCACCCTTTAACAACGGCACCACCAACAACACAGGCCATCATCATCACAACCAGAACCCTTCTTGGGTGGACGAGTTCCTTGACTTCTCCTCCGCCCGGCGCGGCGCTCACCGGCGGTCGGTGAGCGACTCCGTCACCTTCCTGGAGGAGCCAATGAGGTGTGATgggaataataacaacaacaatgagaATGAGTTCGACAAGTTTGATGACGAACAATTCATGTCCATGTTCACGGACGAAGTAGTACTCTCTGGGGTCCCCATGCCGCCACCAACCACCTTGTCCTCCTCTAACCCTTCTAGCCCTTCCGATCAGAACTTCATCAATGATGAGAAAGAGACCAACCAGAAGCTgcaggaggaggaagaggagcACCATCACCAGCTATTGAAAAATGAAGCAGATGAGGTTGAAAGCCAATGCAAACAGGAAATTATACAGCCTCCAAATGACACCAATACTTCTTCTTCCAGTGAGAGAATTACTGACCCCAAGAGAGTCAAAAGAATCTTGGCTAATAGACAATCTGCACAGAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTCGAGCGAAGTGTAACTTCATTACAGGCCGAAGTTTCAGTGCTGTCTCCAAGGGTTGCATTTTTAGATCATCAACGCTTGCTTCTAAATGTCGACAACAGTGCTCTCAAGCAAAGAATTGCTGCCCTTGCTCAAGACAAGATCTTTAAAGAAGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTTTTTCACCAACAAAACCTCAAGAAGATGGAAAATGCTGCAGGGTCACCATTGCCATCTCCATCACCAAAGCCTATATCTGATGCTCAAGCAGAAAAGGAACAAATCCTCAACGTTTGA 969 0.4561 MAQLPPKIPNMSPSWPDFSSHQKMPLPPFNNGTTNNTGHHHHNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLEEPMRCDGNNNNNNENEFDKFDDEQFMSMFTDEVVLSGVPMPPPTTLSSSNPSSPSDQNFINDEKETNQKLQEEEEEHHHQLLKNEADEVESQCKQEIIQPPNDTNTSSSSERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKEAHQEALKREIERLRQVFHQQNLKKMENAAGSPLPSPSPKPISDAQAEKEQILNV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0953 322 MobiDBLite consensus disorder prediction 170 187 - -
Ssu8g0953 322 Gene3D - 191 262 - -
Ssu8g0953 322 Coils Coil 271 291 - -
Ssu8g0953 322 MobiDBLite consensus disorder prediction 110 187 - -
Ssu8g0953 322 Pfam Basic region leucine zipper 189 237 IPR004827 GO:0003700|GO:0006355
Ssu8g0953 322 SUPERFAMILY Leucine zipper domain 192 246 IPR046347 GO:0003700|GO:0006355
Ssu8g0953 322 MobiDBLite consensus disorder prediction 1 46 - -
Ssu8g0953 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 242 IPR004827 GO:0003700|GO:0006355
Ssu8g0953 322 MobiDBLite consensus disorder prediction 137 167 - -
Ssu8g0953 322 MobiDBLite consensus disorder prediction 291 322 - -
Ssu8g0953 322 MobiDBLite consensus disorder prediction 13 43 - -
Ssu8g0953 322 Coils Coil 135 174 - -
Ssu8g0953 322 CDD bZIP_plant_RF2 193 243 IPR044759 GO:0003700|GO:0006355
Ssu8g0953 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 195 210 IPR004827 GO:0003700|GO:0006355
Ssu8g0953 322 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 320 - -
Ssu8g0953 322 SMART brlzneu 188 252 IPR004827 GO:0003700|GO:0006355
Ssu8g0953 322 PANTHER BASIC LEUCINE ZIPPER 34 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0953 Ssu-Chr8 16170890 16174749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0953 1 269 bZIP Transcription Factor Family AT3G58120 57.483 2.41e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu8g0953 bZIP_2 3.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0953 - - gmx:100101874 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0953 8 16170890 16174749 Ssu8g0953 8 16170890 16174749 ECH