Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0942 ATGCTAGAAAAGATGGATGATGGAGAAATTTCAAATGCTTTCCCTCACCAGAACCCATCAACTGGTGCATCAAATAACCAGCCTCCTGTcttgaagaggaagagaaacCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACTCTGATGGCCACAAACAGATTCGTCTGTGAAATTTGTCTGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGAACAAGCAAAGAAGCAAGGAAGCGAGTTTATGTGTGCCCAGAGAAGACTTGTGTCCACCACCATCCTTCAAGGGCTCTGGGAGACTTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGGGAAGTGCTCAAAGCGTTATGCTGTGCAGTCCGATTGGAAAGCACACTCAAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAAGAAACGGCTAGGGTAAACGCAGCATCAAACATGAGCAACTACAGCATCATGCAAAATCCCCTTGGTCCTAACGTGGCAACccaattttcaccatttttcaaGCCAAATTCAAGCTCTGAGGAAACAGGTAATCAAACATCTAAGGGCCTATCCCTTTGGATGACTCAAACATCCCAGGCTCATGAGACAGTGGCTAACAACAATTTGCATGAATTTCATCAACTTGGGTCTGCTACGAGCCCAACAACAATttatggtggtggtgggaaTCCACTTGCTTCATGCTCAAATCCACCACCCTCTAATTATCAGCTAAATTGGGTGTTTGGAAATAAACTCTCCTCCAATGGGAGCCAAGAGCTAACTAGTACTGCTTCACTTCCACTAGTCAATAATATTGTTAAGGATAATCCAAACCTGCAGCTCATAAGTGTTCCTTCCTTGTATAGCTCACAACACCTATCCCATCAAACAACCTCAGCAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATTATTCCTTGGGAGCATAGGTTTGAAATGCAACAGTCCAGGTCAAGATGGGAACAAATTTTGTGGCATATACGGTTCAGGTTCAGTACTCACAAGTCATGGGAATGAGGCAGAGAATAATTATTCAGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCACGTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGCGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGATTTGA 1389 0.4348 MLEKMDDGEISNAFPHQNPSTGASNNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEARKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNMSNYSIMQNPLGPNVATQFSPFFKPNSSSEETGNQTSKGLSLWMTQTSQAHETVANNNLHEFHQLGSATSPTTIYGGGGNPLASCSNPPPSNYQLNWVFGNKLSSNGSQELTSTASLPLVNNIVKDNPNLQLISVPSLYSSQHLSHQTTSANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGIYGSGSVLTSHGNEAENNYSGDLSQMPPTKRRHVQNEESAWGQTRDFLGVGGANHLPPFINQRMDLI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0942 462 MobiDBLite consensus disorder prediction 13 31 - -
Ssu8g0942 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 461 - -
Ssu8g0942 462 PANTHER F-BOX ASSOCIATED PROTEIN 5 461 - -
Ssu8g0942 462 Gene3D Classic Zinc Finger 115 195 - -
Ssu8g0942 462 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Ssu8g0942 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Ssu8g0942 462 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0942 Ssu-Chr8 16067806 16070364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0942 28 446 IDZ Gene Family AT1G03840 51.613 1.91e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0942 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0942 K25870 - gmx:100778666 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0942 8 16067806 16070364 Ssu8g0942 8 16067806 16070364 ECH