Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0940 ATGACTCAGTGCAGTTACCCCGAAAACAACCATAGCATCATTGTGGAGAGGCACAAAGATAGCTTGATCAGAACATGCCCTACGTGTGGTCATCATATCAAATACCAAGAGCAGGCCGCTGGAATTCATGACCTACCTGGACTTCCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTGCGCTCTGATATTCACAAGCTTCACCCGTTAATTGATGAGTTCATCCCTACTCTAGAAGGGGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCCAAAGCATACACGACCGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCGGATGGCAGTGAGACTCGGTGGCACAAAACTGGCAAGACTAGACCAGTCTACATCGGTGGAAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTTTACACTAACTACAGAAAACAAAGGAAGCCGGAGAAAACAAACTGGGTCACGCACCAGTACCACCTTGGCAATAATGAAGAGGAGAAAGAAGGGGAGTTGGTGGTCTCCAAAGTTTTCTATCAAACACAACCTAGACAGTGTGGTTCACTCATGAAAGACTCATACCCTGCAAAACTAAGTGAAGGCGTGCATGAGGTAACTAATCATAAAAACACTGGGTTTGTCGAGTACTACAATAATTCTTTCGTGTCCTTTGATCAAGGGGACCAGCATAGGTCTAGCACTGCACAACTAGTCTCCCATTTCCCTGTCCATGATGGTGCTACTTTCATTTCTTGA 837 0.4528 MTQCSYPENNHSIIVERHKDSLIRTCPTCGHHIKYQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYIGGKLKGYKKILVLYTNYRKQRKPEKTNWVTHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSYPAKLSEGVHEVTNHKNTGFVEYYNNSFVSFDQGDQHRSSTAQLVSHFPVHDGATFIS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0940 278 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Ssu8g0940 278 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Ssu8g0940 278 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Ssu8g0940 278 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 277 IPR044799 GO:0003700
Ssu8g0940 278 SUPERFAMILY NAC domain 42 207 IPR036093 GO:0003677|GO:0006355
Ssu8g0940 278 MobiDBLite consensus disorder prediction 127 142 - -
Ssu8g0940 278 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 277 - -
Ssu8g0940 278 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0940 Ssu-Chr8 16053741 16056485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0940 24 224 NAC Transcription Factor Family AT4G28500 80.198 1.75e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g0940 NAM 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0940 - - gmx:100791648 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0940 8 16053741 16056485 Ssu8g0940 8 16053741 16056485 ECH