Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0939 ATGGCTGAGCTTAACCAGTTATCACtgtttctccttctctctctctttttttcttccactCCCACCCTCTCTCTAAACCAAGATGGTCTCTTCCTCCTCGAGGCCAAGCTCCAACTCTCCGACCCCACCAACGCGCTCTCTTCCTGGAACAGCCGCGACGCCACCCCATGCAACTGGACCGCCGTGACGTGCCACCGCACCACCGGCGCCGTCACCGCCCTCAACCTCTCCGACCTCGAACTCTCCGGCCCCGTCCCCGCCGCCGCACTCTGCCGCCTCCCCTCCCTCTCCTCCCTCTCCCTCGCCAACAACAACCTCAACGCCACCGTCCCCACCGCCGCGTTCGCCGCCTGCGCCGCCCTCCGCCACCTCGACCTCTCCCAGAACCTCATCTCCGGCGCCCTCCCCGGCGCTCTCCCCGACCTCAAAACCCTCGACCTCTCCTCCAACAACTTCTCCGGCGATATTCCGGCGAGCTACGGCGAGTTCCGGCGACTCGAGTCGCTCTCCCTGTTCAACAACCTCCTCAACGGAACCGTTCCCGCTTCCCTCGGAAACATTTCCACCCTCAAAACGCTTCTCCTCGCTTACAACGTTTACTTCAGAAACGGTCCTATTCCGAGCGAGTTAGGGAACCTCACGAATCTCGAGGAGCTTTGGCTCGCGGGGTGCAAACTCGTGGGTCCCATTCCGCATTCTCTGGGGAAGTTAAGTAAGGTTCGGAACCTCGACTTGTCGGTGAACAACCTCGTCGGAAACGTGCCCGAACAACTCGTGTCGGGTTTGCGCAGCATTGAACAAATCGAGCTCTACCAGAACTCTCTCTCCGGCGCGTTGCCACGCGCCGCGTTCGTTAACGTTACTAATTTGGAGCGATTCGACGCCTCGTTGAACGAGTTGACTGGGACGATTCCCGACGAGCTGTGCGAGTTGAGGAAACTCGGGTCGCTCAACTTGTACAGTAATAAGCTCGAGGGAACTTTGCCGGAGAGTATAGTGAAGTCGGAGAACTTGTACGAGTTGAAGTTGTTCAACAACTCGCTCACTGGGTCGTTGCCAAGTGGGTTGGGTGGTAACTCGAGGTTGCTGAGGCTTGATGTTTCGTATAACCGGTTTTCCGGCGAGATTCCGGCGAGTTTGTGCGGCGGGGGAGCGTTGGAGGAGCTGATTCTGATTTACAATTCGTTTTCCGGTGAGATTCCCAAGAGGCTCGGGGAATGCGAGAGTTTGGAGAGGGCTCGGCTTAGGAATAATAACCTTTCTGGTGTTGTGCCTGAGGCGTTTTGGGGTTTGCCCCATTTGTATTTGCTTGAGGTTGTTGAGAATTCTCTTTCTGGTTCGATTTCTAATGCGATTTCCAGGGCTCGGAACTtgtcaattttgttaatttcggGGAATAAGTTTTCTGGGTCGATTCCTGAGGGGGTTGGGGAATTGGTTAATCTTGGGGAGTTTGTTGCGAGTTATAATAGTCTTGGCGGTCGGATTCCGGCGAGTGTGGTTAGGTTGAGTCAGTTGGATAGGCTTGTTCTCAGAGACAATAAGCTTTTCGGAGAGATTCCTGTTGGAGTTGGTGGTTGGAGGAAGCTCAATGAGCTTGATTTGGCGAATAATAGGTTAGATGGGAGTGTTCCTAAGGAGTTAGGGGACTTGCCAGGGCTTAATTATCTTGATCTTTCTGGGAATCGGTTCTCTGGTGAGATTCCAATTGAGCTGCAGAATTTGAAGCTTAATTTGTTGAATATGTCGAACAATCAGCTTTCTGGGGAGATTCCTCCTCTTTATGCCAATGAGAATTATAGAAAGAGTTTTCTTGGGAATCCGGGGCTGTGTAGGGCTCTCTCTGGACTGTGTCCAAGCTTGGGTGAGAGTGAGGGTAAGAACAGGAAGTATGTGTGGGTTTTCCGGTTCATATTTGTGCTTGCCGGGATTGTGTTAATTATTGGGGTGGCCTGGTTTTACTTCAAATTCCAGGACttcaagaagatgaaaaaggGATTTCCCATTTCCAAGTGGAGGTCGTTCCATAAGCTGGGGTTTAGTGAGTTTGAGATTGTTAAATTGCTGAGTGAGGATAATGTCATTGGGAGTGGAGCATCTGGGAAGGTTTACAAAGTTGCGCTGAGTAATGGCGAGGTGGTGGCGGTGAAGAAATTGTGGGGAGCAAGTAAGGTGGGAAATGGATCTGTTGACTCTGAGAAGGATGGATTTGAAGTTGAGGTTGAAACACTGGGAAAGATTCGGCACAAGAATATTGTGAGGTTATGGTGTTGCTGCAACAGTGGGGATAGCAAGCTCTTGGTTTATGAGTACATGCCAAATGGTAGCCTGGCTGATTTGTTGCACAGTAGCAAGAAAGGCTTGTTGGATTGGCCCACCAGATATAAAATTGCTATTGATGCTGCTGAGGGGCTTTCATATTTGCATCATGATTGTGTCCCCCCTATTGTTCATAGGGATGTCAAATCTAGCAACATCTTGCTAGATGATGAATTTGGAGCAAAAGTTGCCGATTTTGGAGTTGCCAAAATTGTTAAGGGAGTCGACCAAGGGGCAGAATCCATGTCTGTGATTGCCGGATCCTATGGTTACATTGCACCAGAATATGCTTATACTCTTCGGGTGAATGAAAAGAGTGATATTTATAGCTTTGGTGTGGTGATTTTGGAGTTGGTAACTGGGAAGCCCCCTCTTGATCCACAGTACGGGGAAAAGGATCTAGTAAAATGGGTTTCCACCACATTGGATCAGAAAGGACAGGATCAGGTGATTGATCCCACCCTCGATTTTCAGTACAGGGAAGAAATCAGCAAGGTACTCAGCGTGGGGCTTCTTTGCACTGGCTCTCTTCCTATAACCCGTCCTTCAATGCGTAGAGTGGTGAAAATGCTGAAGGAAGTAACTTCACTTCCCAAATCCATAAGTGGAAAACTCTCTCCTTATTTTCAGGAAGAGGCTTCGGACATTGATCATCAGGGAAGCTTAGCTTGA 2991 0.4938 MAELNQLSLFLLLSLFFSSTPTLSLNQDGLFLLEAKLQLSDPTNALSSWNSRDATPCNWTAVTCHRTTGAVTALNLSDLELSGPVPAAALCRLPSLSSLSLANNNLNATVPTAAFAACAALRHLDLSQNLISGALPGALPDLKTLDLSSNNFSGDIPASYGEFRRLESLSLFNNLLNGTVPASLGNISTLKTLLLAYNVYFRNGPIPSELGNLTNLEELWLAGCKLVGPIPHSLGKLSKVRNLDLSVNNLVGNVPEQLVSGLRSIEQIELYQNSLSGALPRAAFVNVTNLERFDASLNELTGTIPDELCELRKLGSLNLYSNKLEGTLPESIVKSENLYELKLFNNSLTGSLPSGLGGNSRLLRLDVSYNRFSGEIPASLCGGGALEELILIYNSFSGEIPKRLGECESLERARLRNNNLSGVVPEAFWGLPHLYLLEVVENSLSGSISNAISRARNLSILLISGNKFSGSIPEGVGELVNLGEFVASYNSLGGRIPASVVRLSQLDRLVLRDNKLFGEIPVGVGGWRKLNELDLANNRLDGSVPKELGDLPGLNYLDLSGNRFSGEIPIELQNLKLNLLNMSNNQLSGEIPPLYANENYRKSFLGNPGLCRALSGLCPSLGESEGKNRKYVWVFRFIFVLAGIVLIIGVAWFYFKFQDFKKMKKGFPISKWRSFHKLGFSEFEIVKLLSEDNVIGSGASGKVYKVALSNGEVVAVKKLWGASKVGNGSVDSEKDGFEVEVETLGKIRHKNIVRLWCCCNSGDSKLLVYEYMPNGSLADLLHSSKKGLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSSNILLDDEFGAKVADFGVAKIVKGVDQGAESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPLDPQYGEKDLVKWVSTTLDQKGQDQVIDPTLDFQYREEISKVLSVGLLCTGSLPITRPSMRRVVKMLKEVTSLPKSISGKLSPYFQEEASDIDHQGSLA 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0939 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Ssu8g0939 996 SUPERFAMILY L domain-like 40 377 - -
Ssu8g0939 996 SMART serkin_6 689 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0939 996 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515
Ssu8g0939 996 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Ssu8g0939 996 SMART LRR_typ_2 311 335 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 93 117 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 551 574 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 118 141 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 503 527 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 262 286 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 213 237 IPR003591 -
Ssu8g0939 996 SMART LRR_typ_2 407 430 IPR003591 -
Ssu8g0939 996 SUPERFAMILY Protein kinase-like (PK-like) 687 964 IPR011009 -
Ssu8g0939 996 ProSiteProfiles Protein kinase domain profile. 689 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0939 996 SUPERFAMILY L domain-like 329 611 - -
Ssu8g0939 996 Gene3D Transferase(Phosphotransferase) domain 1 772 977 - -
Ssu8g0939 996 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Ssu8g0939 996 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 973 - -
Ssu8g0939 996 Gene3D Ribonuclease Inhibitor 260 620 IPR032675 -
Ssu8g0939 996 Gene3D Phosphorylase Kinase; domain 1 672 771 - -
Ssu8g0939 996 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Ssu8g0939 996 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 10 973 - -
Ssu8g0939 996 Pfam Protein kinase domain 691 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0939 996 Gene3D Ribonuclease Inhibitor 30 140 IPR032675 -
Ssu8g0939 996 Gene3D Ribonuclease Inhibitor 202 259 IPR032675 -
Ssu8g0939 996 Gene3D Ribonuclease Inhibitor 141 201 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0939 Ssu-Chr8 16036544 16039722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0939 21 996 Receptor kinase-like Gene Family AT1G28440 59.820 0.0 1128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu8g0939 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0939 - - gmx:100778128 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0939 8 16036544 16039722 Ssu8g0939 8 16036544 16039722 ECH