Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0938 ATGGGTGTTGACTATTACAAGATCCTTCAGGTCGATAGGAATGCCAACGACGACGACCTCAAGAAGGCTTACCGGAGACTCGCCATGAAATGGCACCCCGACAAGAACCCCAATAACAAGAAAGAAGCCGAatccaaattcaaacaaatctCCGAAGCATACGAGGTGTTGAATGATCCTCAGAAGAGAGCTATTTATGACCAATACGGGGAAGAGGGTCTGAAGGGTCAGGTGCCACCTCCTGATGCTTCTGGTGGTGGAGGAACCACGTTCTTTTCAACCGGGGACGTTCCGACGTCGTTTCGGTTCAATCCTCGTAGTGCTGATGACATTTTTGCTGAGTTCTTTGGGTTCTCCGACCCGTTTGGTGGTGGCATGAGGTCGAGGTTCACTTTTGGTGATGAGGTGTTTAGGTCTTTTGGGGAAGGAGGAGGGGGAGTCTACATGAGTCAAGGTGGTGGTCCTCGCAAGGCTCCTCCCATTGAGAACAAGTTGCCCTGCTCTCTCGAGGAGATATACAAAGGGACCACCAAGAAGATGAAGATCTCTAGGGAAGCTTTTGGTGCCAGTGGCAAAACCATGCAGTTGGAGGAGATCTTGACAATCAATGTCAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGAAACGAACAGCCAAATGTGATGCCTGCTGACCTTGTTTTCATTATTGATGAAAAACCGCACAGGGAATTCACTCGTGATGGAAATGATCTCATTGTCACCCAAAAGATTTCTCTTGCCGAAGCCTTGACTGGTTATACTGTGAACCTCACCACATTGGATGGTAGAAACTTAACTGTCCCTGTCAACAATGTTATTCATCCTGATTATGAGGAGGTTGTCGCAAGAGAAGGAATGCCTCTCCCAAAGGATCCAACAAAGAAAGGAAACTTGAGGATAAAGTTCAGCATCAAGTTCCCAACTCGGCTTACTGTGGATCAGAAGGCAGGAATCAAGAAACTCTTGGCTACCTGA 1011 0.4718 MGVDYYKILQVDRNANDDDLKKAYRRLAMKWHPDKNPNNKKEAESKFKQISEAYEVLNDPQKRAIYDQYGEEGLKGQVPPPDASGGGGTTFFSTGDVPTSFRFNPRSADDIFAEFFGFSDPFGGGMRSRFTFGDEVFRSFGEGGGGVYMSQGGGPRKAPPIENKLPCSLEEIYKGTTKKMKISREAFGASGKTMQLEEILTINVKPGWKKGTKITFPEKGNEQPNVMPADLVFIIDEKPHREFTRDGNDLIVTQKISLAEALTGYTVNLTTLDGRNLTVPVNNVIHPDYEEVVAREGMPLPKDPTKKGNLRIKFSIKFPTRLTVDQKAGIKKLLAT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0938 336 Pfam DnaJ C terminal domain 161 319 IPR002939 -
Ssu8g0938 336 CDD DnaJ 4 59 IPR001623 -
Ssu8g0938 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Ssu8g0938 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Ssu8g0938 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
Ssu8g0938 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Ssu8g0938 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Ssu8g0938 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Ssu8g0938 336 Gene3D - 160 238 - -
Ssu8g0938 336 Gene3D - 240 320 - -
Ssu8g0938 336 MobiDBLite consensus disorder prediction 72 91 - -
Ssu8g0938 336 SMART dnaj_3 3 62 IPR001623 -
Ssu8g0938 336 CDD DnaJ_C 159 322 - -
Ssu8g0938 336 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 335 - -
Ssu8g0938 336 Pfam DnaJ domain 4 67 IPR001623 -
Ssu8g0938 336 Gene3D DnaJ domain 3 127 IPR036869 -
Ssu8g0938 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Ssu8g0938 336 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Ssu8g0938 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 154 250 IPR008971 GO:0006457|GO:0051082
Ssu8g0938 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 328 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0938 Ssu-Chr8 16012124 16015537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0938 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 5.34e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0938 K09510 - gmx:100778672 574.704