Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0936 ATGCTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAAGCCAAGGAGAAATGGAAAGTTTCTCGATTGCAACCGACGACTTTGCTGACCTTTCAGAAGGGAACTTGCTTGAAAGCATCAACTTCGATGATCTCTTCATGGGAATCAATGATGAAGGAGATGCCTTGCCGTATCTGGAGATGGACCCTGAAATGCTTGCTGAGTTCTCCCTCAGTGAGGAATCTGAGATAACCTCATCAGTTTCAGTGGCAAATAACAAAtctgataataataataatgggaaTATAGTTATTACGAAGAAACAAGATGAGGTCATAGCAGCCAATTCTTCTTCAGATTCGGGTACCAATTCGACGTCAAGTCGAGGGGAGGAGATAGTAAGCAAAAGTGATGAGTCAGTGGTGGTGAATCCATCCCCCAGGGAAAGtgagaaaggaagaaaatcaTCAACTCAATCAAGGAACAATCCTCAAGGGAAAAGAAAGGTTAAGGTGGATTGGACCCCAGAATTGCACAGGAGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGGTGGAGTCAACGGAGGCAATTGTTAGGTGCAGCAGGTGTAGGTAGAGGAGGCAAGAGTGAAGTGAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGAGACCAATGCACCATTTTAGACCTTTCCATGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTACCCTATTccccgtcaccaccaccatggCCGACTCCGTCTCCGCCACCTCCAGACCCTTTATATTATTGGCACCAACATCAACGGGCTCCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGAGATTTGGCCCTCAAACTGTTCCGGGCATCCCACCACACCATGCAATGTACCAAATAGTAGATCCAGGCATTGGCATCCCGTCCAGCCAACCGCCACCTCGGCCACTCTTCGACTTTCATCCGTCTAAGGAGAGCATAGATGCGGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCTCTTGGCCTTAAAGCTCCAGCTCTTGACGGTGTAATGGGCGAATTACAAAGACAAGGGATTCCCAAAATTCCTCCCTCTTGTGCTTGA 1290 0.4612 MLAVSPLRSTRDESQGEMESFSIATDDFADLSEGNLLESINFDDLFMGINDEGDALPYLEMDPEMLAEFSLSEESEITSSVSVANNKSDNNNNGNIVITKKQDEVIAANSSSDSGTNSTSSRGEEIVSKSDESVVVNPSPRESEKGRKSSTQSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRRQLLGAAGVGRGGKSEVNPWLAPTMGFPPMRPMHHFRPFHVWGHHTMDQSFMHMWPKHLPYSPSPPPWPTPSPPPPDPLYYWHQHQRAPNAPTPGTPCFPQPLTTTRFGPQTVPGIPPHHAMYQIVDPGIGIPSSQPPPRPLFDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0936 429 MobiDBLite consensus disorder prediction 80 165 - -
Ssu8g0936 429 Pfam Myb-like DNA-binding domain 165 214 IPR001005 -
Ssu8g0936 429 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 429 - -
Ssu8g0936 429 MobiDBLite consensus disorder prediction 80 124 - -
Ssu8g0936 429 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 429 IPR044825 GO:0003700|GO:0045893
Ssu8g0936 429 Gene3D - 159 220 - -
Ssu8g0936 429 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 162 216 IPR006447 GO:0003677
Ssu8g0936 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 218 IPR017930 -
Ssu8g0936 429 SUPERFAMILY Homeodomain-like 160 219 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0936 Ssu-Chr8 15967307 15971057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0936 1 297 G2-like Transcription Factor Family AT5G44190 42.038 2.91e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu8g0936 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0936 - - gmx:100790591 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0936 8 15967307 15971057 Ssu8g0936 8 15967307 15971057 ECH