Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0934 ATGGCTTCGTTATTTAAGGATCCGTCGAAGCTTTCAGCGTATCGAGATAGAAGGTTCCCCGGAACGCAAGAGGATTTTGAGCACGCGCTTCTGGCCTCAACCACCGTTTACGTGGGGAACATGTCGTTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTTTCGCGAGCTGGGGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACACCAAAACGCCCTGCGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCGTGCAAATACATAAGTGGGACGATACTCGATGATCGTCCAATTCGTGTTGATTTTGATTGGGGATTTCAGGATGGAAGACAATGGGGGCGTGGTAGGAGTGGTGGCCAGGTCCGTGACGAATATCGCACTGATTATGATCCTGATATCCTTTTAATCGGTGGTTATGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGTTCTTTTCCACCAGTTCTTCCAACTTCCTATGGTAGACATGGTGGAAGTCATGGTCATGGTGGTTCCCAGCGGCATGGTAGAGATTACTATAGGAAGAGACCCCGAGATGATGACCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCATGAATCTAGGAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGACGATGAAGATGATAGAAAAAGACGGGCTTAA 771 0.4643 MASLFKDPSKLSAYRDRRFPGTQEDFEHALLASTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLIGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVLPTSYGRHGGSHGHGGSQRHGRDYYRKRPRDDDRHTHESSKRTSDHESRRNTDHESRPEKNPRFRESGDSDDDDEDDRKRRA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0934 256 CDD RRM_NCBP2 36 113 IPR034148 -
Ssu8g0934 256 MobiDBLite consensus disorder prediction 190 256 - -
Ssu8g0934 256 Gene3D - 6 153 IPR012677 -
Ssu8g0934 256 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 217 - -
Ssu8g0934 256 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
Ssu8g0934 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Ssu8g0934 256 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 217 IPR027157 GO:0000339|GO:0005846|GO:0045292
Ssu8g0934 256 SMART rrm1_1 35 108 IPR000504 GO:0003723
Ssu8g0934 256 MobiDBLite consensus disorder prediction 174 256 - -
Ssu8g0934 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0934 Ssu-Chr8 15943910 15947638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0934 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 7.40e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0934 K12883 - gmx:100789535 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0934 8 15943910 15947638 Ssu8g0934 8 15943910 15947638 ECH