Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0928 ATGAAGCGTTATGTTTacattgatgatgatgaatcATCTCATGATATTTACTGTGATAATCGTATATCAAACAGAAAATATACTGTATTGAACTTTCTTCCAAAAAATTTATGGGAACAATTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTGCAGTTATGGCCTCTCATTACTCCGGTAAATCCTGCCAGTACGTGGGGTCcacttatctttatttttgctGTCTCTGCATCAAAAGAGGCATGGGATGATTACAATAGATATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTTTGGGTTGTCAAGAAGGGCGTCAAGAAACTTATCCAAGCTCAGGATATTCATGTAGGTAATATAGTATGGCTACGTGAAAATGATGAAGTACCTTGTGACCTTGTTTTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGACAGCTGCGCTGGATGGTGAAACTGATCTGAAGACACGGGTCATACCTTCTGCTTGCATGGGAATTGATATTGAACTATTGCACAAAATTAAGGGCGTAATTGAGTGTCCCTGTCCAGATAAACACATCAGGAGATTTGATGCAAACATGCGGTTGTTTCCCCCATTTATTGACAATGATATATGCCCTTTAACCATTAAAAACACTATTCTTCAGTCATGTTACTTGAGAAACACTGAGTGGGCATGCGGAGTGGCTGTATATACAGGCAATGAAACCAAAATGGGCATGAGTAGAGGTATACCAGAACCAAAGCTCACTGCTATGGATGCTATGATTGACAAGTTGACTGGTGCTATATTTATATTCCAAATTGTTGTTGTTCTGGTTCTTGGCATAGCGGGTAATGTTTGGAAGGATACAGAAGCTAAGAAGCAATGGTATGTTCTTTACCCTCATGAAGGTCCTTGGTATGAACTGTTGATCATCCCTTTGCGATTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTGGTGAAGAGCTTGTATGCAAAATTTATTGACTGGGACCATCAAATGATTGACCTAGAGACTAGTATTCCATCCCATGCAACAAATACAGCTATAAGTGAGGACCTGGGACAAGTTGAGTACATTTTGACTGACAAAACAGGCACCCTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTGGTGGCAATTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTCAATGCTGTTTCCAGCGGTTCTTCTGATGTTATACGATTTCTTACTGTTATGGCAATATGTAATACTGTCATACCGACGCAAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGACGAGGATGCCCTTGTTCATGCTGCCGCTCAATTGCATATGGTTTACTGTAATAAGAATGGAAATATTCTTGAAGTCAAGTTCAACTCTTCAATACTTCAGTATGAAGTCCTGGAAACCTTGGAATTTACCTCTGATAGGAAAAGAATGTCAGTAGTATTGAAAGATTGCCAAAATGGAAAGATCCTTCTCTTGTCAAAAGGAGCAGATGAGGCTATTCTTCCATATGCTCGTGCTGGGCAGCAGACCCGACATTTCATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACACTATGTTTGGCTTGGCGTGAGTTAAAGAGAGATGAATATCGAGAATGGTCTTTGATGTTTAAAGAGGCCAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGTCAACGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGGGTGCCTGAAACAATAGAAACACTGAGAAAAGCTGGAATAAATTTTTGGATGCTAACTGGAGACAAGCAGAATACTGCAATACAAATTGCTCTgtcatgtaattttatttccccAGAACCAAAGGGACAGCTTCTATCAATTGATGGCAAAACAGAGGATGAGGTGTGTAGGAGTTTAGAGAGAGTGCTCCGCACTATGCAGATAACTACCTCAGACCCCAAGGATGTGGCTTTTGTTGTTGATGGTTGGGCACTTGAGATCGCACTTAACCACTATCGTGAAGCTTTCACTGAGCTGGCAGTTTTGTCGAGGACTGCTATATGTTGTCGTGTGACACCATCACAAAAAGCACAGCTTGTACAAATCTTAAAATCATGTGATTATAGAACGTTGGCTATTGGTGATGGTGGGAATGATGTAAGGATGATACAGCAAGCTGATATTGGGGTAGGCATCAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGTATTGGAAAGTTTAGATTCCTGAAGAGATTAATTCTGGTCCATGGCCGCTACTCTTACAACCGTACAGCATTTCTTTCTCAATATTCATTCTATAAGTCCCTACTGATATGCTTCATCCAGATATTtttttcatttatttcaggTGTCTCTGGAACTAGCCTCTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTACACTAGTGTTCCTGTTCTAGTCAGCGTGCTTGACAAAGATCTTAGTGAGGAAACTGTGATGCAACAtcctcaaattttattttactgccAAGCGGGAAGGCTTCTAAATCCTAGTACATTTGCTGGATGGTTTGGGCGATCTCTCTTCCATGCAATAGTTGTATTTGTGATAAGCATACATGCCTACGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCACTTTCCGGTTGTATATGGTTGCAGGCATTTGTAGTAACAATGGAGACCAATTCCTTTACTATATTGCAACATCTTGCTATATGGGGTAATCTGGCTGCCTTTTATGTCATCAATTGGATCTTCAGTGCTCTTCCTTCATCAGGGATGTATACAATTATGTTTCGGTTGTGTCGACAACCGTCATATTGGATAGCAATTTTTCTCATGGTTGCGGCGGGGATGGGTCCAATTCTAGCCATCAAGTACTTCCGATATACATATAGACCGAGCAAAATCAATACTCTTCAGCAGGCTGAACGTCTGGGTGGGCCAATATTGTCTCTTGGCACCATTGAGCCTCAGCCCAGACCTATAGAGAAAGATGTTTCTACCTTGTCAATAACACAACCCAAAAACAGAAATCCTGTGTATGAACCTCTGTTGTCAGATTCTCCAAACGCCACCAGAAGATCTTTTGGAGCAGGAACACCATTTGATTTTTTCCAGTCACAATCAAGATTATCGCTGTCTAGCAGCTACACAAGAAATTGCAAGGATAACTGA 3324 0.3977 MKRYVYIDDDESSHDIYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVKKGVKKLIQAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYIETAALDGETDLKTRVIPSACMGIDIELLHKIKGVIECPCPDKHIRRFDANMRLFPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAVYTGNETKMGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVLVLGIAGNVWKDTEAKKQWYVLYPHEGPWYELLIIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDLETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCIGGNFYGNENGDALKDVELLNAVSSGSSDVIRFLTVMAICNTVIPTQSKTGDILYKAQSQDEDALVHAAAQLHMVYCNKNGNILEVKFNSSILQYEVLETLEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHFIEAVEQYAHLGLRTLCLAWRELKRDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLRTMQITTSDPKDVAFVVDGWALEIALNHYREAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYDKSEMEEVSMVALSGCIWLQAFVVTMETNSFTILQHLAIWGNLAAFYVINWIFSALPSSGMYTIMFRLCRQPSYWIAIFLMVAAGMGPILAIKYFRYTYRPSKINTLQQAERLGGPILSLGTIEPQPRPIEKDVSTLSITQPKNRNPVYEPLLSDSPNATRRSFGAGTPFDFFQSQSRLSLSSSYTRNCKDN 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0928 1107 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Ssu8g0928 1107 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Ssu8g0928 1107 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Ssu8g0928 1107 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Ssu8g0928 1107 Pfam Cation transport ATPase (P-type) 436 532 - -
Ssu8g0928 1107 SFLD p-type atpase 362 801 IPR044492 -
Ssu8g0928 1107 Gene3D - 445 592 IPR023299 GO:0000166
Ssu8g0928 1107 Gene3D - 75 251 - -
Ssu8g0928 1107 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 600 662 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0928 1107 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0928 1107 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Ssu8g0928 1107 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1017 IPR032630 -
Ssu8g0928 1107 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Ssu8g0928 1107 SFLD C1.7: P-type atpase like 362 801 - -
Ssu8g0928 1107 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 424 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu8g0928 1107 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Ssu8g0928 1107 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 385 1106 - -
Ssu8g0928 1107 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Ssu8g0928 1107 Gene3D - 602 790 IPR023214 -
Ssu8g0928 1107 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Ssu8g0928 1107 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1016 IPR023298 -
Ssu8g0928 1107 SUPERFAMILY HAD-like 374 805 IPR036412 -
Ssu8g0928 1107 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Ssu8g0928 1107 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 385 1106 - -
Ssu8g0928 1107 Pfam E1-E2 ATPase 99 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0928 Ssu-Chr8 15840753 15858790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0928 1 1107 Primary Pumps ATPases AT5G44240 86.721 0.0 2022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0928 K01530 - gmx:100786505 2130.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0928 8 15840753 15858790 Ssu8g0928 8 15840753 15858790 ECH