Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0927 ATGAGCAGTGTTTGTGCGGAGCAGCACAAGTTTCACCCTTCTCACCAACTCCTCTCTCCGAAGAAACCCCTCAGAGAGATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGCGCCGCCGCTGCCTGCGGCGGCGCAGACATGTTCTCCGACGAGACCATGCTGCAAAAGTTCCTCCCTTCCAACAACCTCGACGACTCTGACGAGGACGACCCTTACTCCTCCGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCGGTGCACCCGCAGCCGGAGCCACGACTGGACCGAGTGCCCTTTCGCCCATCCGGGCGAAAAGGCACGCCGCCGTGACCCGCGGCGGTATCACTACTCAGGAACAGTCTGTCCTGAGTATCGCCGTGGAGGGTGCAGCCGCGGCGATGCATGCGAATACGCGCATGGCGTATTCGAATGCTGGCTGCACCCTGCCAGGTACAGGACAGAGGCCTGCAAGGACGGCAAGAACTGCAAGAGAAAGGTGTGTTTCTTCGCACACACCCCTCGCCAGCTGAGAATTTTACCGGTAACTTCTTCATCCTCTTCTAATGACATGTCATGCAAGAAGAACGTTAACAAGCTCTTGAACCATGCTTCAAgatcaaacaacaacaacaactgtTGTTTGTTTTGCCATTGtgctgcttcttcttcttccaccGCTTCTCCAACTTCCACACTCTTTGGCATGTCGCATTATTCGCCGCCGCTGTCGCCGTCGTCGTCGTCGACCTCGCCGCCTCCTTCCCCGTTGAAACCCCGAAACGGGGTCTCTCCGATTTCCCGCTACAGTGCTGTGAATGTGAACCCTCATCGTGGGGTGGTGAGTTACAAAGACGTGTTCGCTGAGTTGGTGAATTCTTTGGAGGGTTTGAGTTTCAACGAGGGTTCGCCTGTTTCCGGTGCCATAGCTCCGAACCTGCCTTGGCTTGATGTTCCTGTGAACTGTGAGGAACAGCAACAACCGTTCATTGTTTCTTCTTTTGGCTGCGAAGatcagcagcaacaacaacaacagttcATTTTTTCACCACCGTCCACCACTCAGATACCGACAAGTTCTAATGGGAAGGTTTGTGGCAACAAATTCTTGGGCAACGACAACAAGGTTGTCGGTGCTGACGTTAATGGCCCGGATCTCGCGTGGGTGAATGAGTTGCTGATGTAA 1188 0.5177 MSSVCAEQHKFHPSHQLLSPKKPLREIDIPPRKLLTRRAAAACGGADMFSDETMLQKFLPSNNLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTECPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDACEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSSNDMSCKKNVNKLLNHASRSNNNNNCCLFCHCAASSSSTASPTSTLFGMSHYSPPLSPSSSSTSPPPSPLKPRNGVSPISRYSAVNVNPHRGVVSYKDVFAELVNSLEGLSFNEGSPVSGAIAPNLPWLDVPVNCEEQQQPFIVSSFGCEDQQQQQQQFIFSPPSTTQIPTSSNGKVCGNKFLGNDNKVVGADVNGPDLAWVNELLM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0927 395 MobiDBLite consensus disorder prediction 243 264 - -
Ssu8g0927 395 Gene3D - 118 181 - -
Ssu8g0927 395 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Ssu8g0927 395 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Ssu8g0927 395 PANTHER UNKEMPT FAMILY MEMBER 26 394 IPR045234 -
Ssu8g0927 395 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 394 - -
Ssu8g0927 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Ssu8g0927 395 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Ssu8g0927 395 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0927 Ssu-Chr8 15835268 15836455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0927 73 295 C2H2 Transcription Factor Family AT5G12850 41.778 2.02e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu8g0927 zf-CCCH 5.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0927 K23047 - gmx:100801371 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0927 8 15835268 15836455 Ssu8g0927 8 15835268 15836455 ECH