Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0925 ATGCCTGCCCAGAAGCGCTCCTTGCCCGAGTCTCTGGACGAAGGGGACACTTCGCAGCAGAACCTCTTCCATTCTCGACAACATGcgaagcaacaacaacaacagcaacaggACCAGCCGCCGGAACACGAGGAGGACCAccaagaggaggaggaggaagaagaagaaggagaaggagaagaagacgaagaagaggaagaagaagaagaagaagtagaagaagCGGCGCAACATGATAATAACCGCGACAAGGAAAAGCCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCCgaATTCGTGTTTGTAGAACTTCTGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACACGAACTGTTATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCGATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGCGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAAGAAGAGGAGCTTGAATTTCGTGAGGAGGAGAAGAACCGTAATAAGCTGATTCAAGCTTCTATAGCAAAAGTAGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAAAGATACACCAGGGGCATTTGTAACAAGATCGCAGCGTAATCAACGAAACATTCATTCTAGGAGACAGACCCAAGCAATCGAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAAGACTCATCTTCAGCCGATGAGCGATGTACAGAATCCCGACCGAGAGGGCGAAAGAGATTGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCCATGGCAAGTCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATCGAGGAATTTCAAGGCAGGTGTCAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGAAGTCACACTCGgcatggcagtggtggtggtagcaataGCAAAAGTTCTCGCAGTAGTCGATTGTCTAAGTTGGTTGATCATCTCCGAAGTTTGGATGAAAACACTGATGAGTTTGAAATCCATCTCATGCTTGTTTCTCTCAACCAACAAAGTACACCAAGTTTGCAGCAGCCACACCTTTGTTGCCGACCAACTTTGTCTGTCAAGCACCTTTATGATTATGTTGCTTGTCAAACACCTTTGCCGGTTGAAGGGATTGAAATACTGGCAGTCAAAGGATGCTGCAGTATAAATTGTGACAAGTCAGCTGATGAGAATGCGGCCCTGATATATGATGAGCTAACAACGCTGATTATAGATCCACACAAAGATGAACTGGAAATTTTGCAAGCACACGAGACTCTGGCAGGGCTTAGATCCAAATGCATATCCAAGAGGGGGCATTTGATTCTTGCATACAGGCGGAAGGAGGCATCATAG 1491 0.4105 MPAQKRSLPESLDEGDTSQQNLFHSRQHAKQQQQQQQDQPPEHEEDHQEEEEEEEEGEGEEDEEEEEEEEEVEEAAQHDNNRDKEKPQDSDETPSSGSEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKLIQASIAKVVQRQSEALVKRRKDTPGAFVTRSQRNQRNIHSRRQTQAIEGSEDNEEENDNNEKDSSSADERCTESRPRGRKRLARVRPSQPSSSMASPDGGCIESDMDISRENRGISRQVSKPRKLTWGRGGFRSHTRHGSGGGSNSKSSRSSRLSKLVDHLRSLDENTDEFEIHLMLVSLNQQSTPSLQQPHLCCRPTLSVKHLYDYVACQTPLPVEGIEILAVKGCCSINCDKSADENAALIYDELTTLIIDPHKDELEILQAHETLAGLRSKCISKRGHLILAYRRKEAS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0925 496 CDD RING-HC_RING1_like 118 158 - -
Ssu8g0925 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 494 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 342 356 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 267 282 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 231 248 - -
Ssu8g0925 496 Coils Coil 47 81 - -
Ssu8g0925 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 188 IPR013083 -
Ssu8g0925 496 SUPERFAMILY RING/U-box 105 172 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 1 102 - -
Ssu8g0925 496 Coils Coil 187 207 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 308 322 - -
Ssu8g0925 496 ProSiteProfiles Zinc finger RING-type profile. 118 158 IPR001841 -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 13 38 - -
Ssu8g0925 496 ProSitePatterns Zinc finger RING-type signature. 134 143 IPR017907 -
Ssu8g0925 496 PANTHER OS11G0578200 PROTEIN 1 494 IPR044592 -
Ssu8g0925 496 Pfam Zinc finger, C3HC4 type (RING finger) 117 157 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 218 358 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 44 74 - -
Ssu8g0925 496 MobiDBLite consensus disorder prediction 75 102 - -
Ssu8g0925 496 SMART ring_2 118 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0925 Ssu-Chr8 15811016 15825761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0925 111 181 C3H Transcription Factor Family AT3G23060 35.135 4.72e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0925 K10695 - gmx:100776547 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0925 8 15811016 15825761 Ssu8g0925 8 15811016 15825761 ECH