Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0924 ATGGAGCACTTTGTGGTCCTCCCTCACTCTCTCATTCCCTCTCTCTCACTTTTCCACCTTTATAATTCTTCTGTCATCACCCTCAAACTCAGCTTCCAAGTTGGCAACCATTCTTTCATGGAGGGGTTGGGGCCAAAGGTGATGGGGAGGAGCGACAAGTTGAAGAGGGAAGGTGTGGCAGATTGTGTTGATAACAGAAACGGGTATGTGGAgcaggaaaagaagaagaaaggggtGGCGGGTAGTGATGGGAAGAAAGGGTCTGCTGcaagtggtggtggtggcaatagcATGCGGTGTTGTCAAGCGGAGAAGTGCAACGCGAATCTTCATGAGGCCAAGCAGTACCACAGGAGGCACAAGGTGTGTGAGTATCATGCCAAGGCTCAGGTCGTGCTTGTGGATGGCGTGAGACAACGGTTTTGTCAGCAATGTAGCAGGTTTAGGGAGATTCCACGAGTTAGCTGA 468 0.4573 MEHFVVLPHSLIPSLSLFHLYNSSVITLKLSFQVGNHSFMEGLGPKVMGRSDKLKREGVADCVDNRNGYVEQEKKKKGVAGSDGKKGSAASGGGGNSMRCCQAEKCNANLHEAKQYHRRHKVCEYHAKAQVVLVDGVRQRFCQQCSRFREIPRVS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0924 155 MobiDBLite consensus disorder prediction 73 97 - -
Ssu8g0924 155 SUPERFAMILY SBT domain 99 152 IPR036893 GO:0003677|GO:0005634
Ssu8g0924 155 ProSiteProfiles Zinc finger SBP-type profile. 98 155 IPR004333 GO:0003677
Ssu8g0924 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 76 151 IPR044817 GO:0003677
Ssu8g0924 155 Gene3D - 96 153 IPR036893 GO:0003677|GO:0005634
Ssu8g0924 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 76 151 - -
Ssu8g0924 155 Pfam SBP domain 101 151 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0924 Ssu-Chr8 15799634 15800550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0924 81 151 SBP-box Gene Family AT1G53160 56.338 2.90e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu8g0924 SBP 5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0924 - - ccaj:109810441 158.303