Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0922 ATGGTGGCCGCTGAAAGATTGGAGCTTTGTTTGTGTAAGAGGAGGAGGGGGCTGGGAATTTTGTTCCGGATTGCATTTGGGTGGTGGGTGGTTCTACTGTTAGTTAGTCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCATGGGATGATGAGCGGCTATTTACAAGAAAGGACGAGAGCAACTTAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACTTGGAAATTTTTAGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGCAATTCTGTAATTGAATTAGTTAGTACGCCCACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTAGTTATATTCCATGATGTGTTTGACAATGAATACGATGTTGGTGGTGCTAAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAaaagaaggggagttgaatcAGAATgaagattatattttatctaatccaTATCATCTGCTTGGAGTCTTCTCATCTCAGGTACTACAAGATTCTTCGCGAGATAAGATGTGGAGAAGAaaacattCTCTGATTCATGACATGGAGAAACACTGTAATATTGAAATTGCTGCTCAGATTTCACGCTTGCCATCGTCAAATAATGAAGGTGAACATGATAATTTTCATCTAGAAGGGTTAATGGAAAGTCCCTCAGCGGATGATGATGGGGACTGCTTCTCACCTATACTGTTAAATGCAACATCGGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCAGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATACCTCCTTGCTATCTGGAAAGCAAGTAGGCCATTGAGTAATGGGGAAGGCTGGGAAACAATGAGGCGAGAACTTTCAGTCTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCACGCAAACCATTACATCCTCATTATATCTTAGGGATAACTGTTACTCGGCTAGCAAtcccattatatatttttggttgcCCTAACAACTTCATGCGCATAGAGCCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGATCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATCGGAGGTTTGATCAGGATACGAGACATGCTACAGACTGTGTTATTTGCATGACTGCCATTGATCTTTCCCAGCGATTTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCACTACCCCCTGCCTAG 1713 0.397 MVAAERLELCLCKRRRGLGILFRIAFGWWVVLLLVSPVAGLRPLRERTRSWDDERLFTRKDESNLGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVGGAKIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDMEKHCNIEIAAQISRLPSSNNEGEHDNFHLEGLMESPSADDDGDCFSPILLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHATDCVICMTAIDLSQRFNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0922 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Ssu8g0922 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 570 IPR013083 -
Ssu8g0922 570 Pfam Ring finger domain 519 564 IPR001841 -
Ssu8g0922 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Ssu8g0922 570 SMART ring_2 520 563 IPR001841 -
Ssu8g0922 570 PANTHER RING ZINC FINGER PROTEIN 12 570 - -
Ssu8g0922 570 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 12 570 - -
Ssu8g0922 570 SUPERFAMILY RING/U-box 502 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0922 Ssu-Chr8 15748335 15762440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0922 520 567 C3H Transcription Factor Family AT4G12190 37.500 5.64e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0922 K23788 - gmx:100780140 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0922 8 15748335 15762440 Ssu8g0922 8 15748335 15762440 ECH