Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0917 atggaTGCACCACAGGGAAGTCAACCTTCTTCTACCAAAGTCGAAAGGAAGATCGTAGAGAAAAACAGGAGAAACCAGATGAAGAACCTCTATTCCGAACTCAAGTCTCTTCTCCCTACCCAAAATCCCAAGGAAGCGATATCAGTGTCTGATCAAATAGATGAAGCTATCAACTACATCAAAAGCCTAGAGACAAAAGTGAAGATGGCgcaggagaagaaagaaaggttaattgaaaggaaaagaactCGGAGTGGCTGCTCGGGTGCTTCTGAAGCACAAGGAAGCCTAAAATTGCCAAAAATCGAGATTCATGAAACGGGTACTTCGCTTGAAGTCATTCTGACATGCGGGGTTGATAACCAACTCATTCTCTGTCAAATCATTCGAATATTGCATGAAGAGAACGTCGAGGTCGTCGCTGCCAATTCTTCAATGGTTGGAGATTCAGTGCTTCATGTTGTGCACGGGGAGGTTCAGCAATCTTCCTTTCAATTTGGAGCGACCAAAGTCAGTGAGAGGCTGAAATGGTTTGTAAACGGATCCATCAGTGATGTGGAAATGGAGCCTGAATTGTGGGATTTTGAAATTGGTACTGCTGAGACGTGGGGGCTTCTAGATCTTACAGTAGACAAGGGCTTACCATCAAATCCTTTGTAA 660 0.4152 MDAPQGSQPSSTKVERKIVEKNRRNQMKNLYSELKSLLPTQNPKEAISVSDQIDEAINYIKSLETKVKMAQEKKERLIERKRTRSGCSGASEAQGSLKLPKIEIHETGTSLEVILTCGVDNQLILCQIIRILHEENVEVVAANSSMVGDSVLHVVHGEVQQSSFQFGATKVSERLKWFVNGSISDVEMEPELWDFEIGTAETWGLLDLTVDKGLPSNPL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0917 219 SMART finulus 17 69 IPR011598 GO:0046983
Ssu8g0917 219 Gene3D - 4 88 IPR036638 GO:0046983
Ssu8g0917 219 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g0917 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Ssu8g0917 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 80 IPR036638 GO:0046983
Ssu8g0917 219 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Ssu8g0917 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 186 - -
Ssu8g0917 219 Coils Coil 53 80 - -
Ssu8g0917 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 186 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0917 Ssu-Chr8 15635939 15637149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0917 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.947 3.85e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0917 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0917 - - gmx:100784042 333.954