Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0916 ATGGATCAACAACAGGGAAGTCAACCTTCTTCAACCAAAGTCGAAAGAAAGATCGTAGAGAAAAACAGGAGAAACCAGATGAAGAACCTCTATTTCAAACTCAACTCTATTCTTCCTAACTATAATCCCAAGGAAGCGATGCCGCTGCCTGATCAAATAGACGAGGCTATCAATTACATCAAAAGCCTAGAGACAAACGTGAAGATGGCgcaagagaagaaagaaatgttaatggaagagaagagaactcGCAGTGGCTGCTCGAGGGCTTCTGAAGCACAAGGAAGCCCAAAATCGCCAAAAATCGAGATTCATGAAATGGGTTCTTCGCTTGAAGTCATTCTAACATGTGGGGTCAATAACCAGTTCATTTTCTGTGAAATTATTCGAATTTTGCATGAAGAGAACGTTGAGGTGATCACTGCCAATTCTTCGATGGTTGGAGATTCAGTGCTTCATGTTGTGCGCGGGGagATTCGGcaatctttctttcaatttggAGCGACCAAAGTGAGTAAGAGGCTGAAAAGGTTTGTAAACGGATCCATCAGCGATGTGGAAATAGAGCCTGAATTATGGAATCTTGTAATTGATACTAGTGAGGCGTGGAGGCTTCTAGATCCTACAATAGACAACTGTTTCCCACCGAATCCTTTGTAA 660 0.3894 MDQQQGSQPSSTKVERKIVEKNRRNQMKNLYFKLNSILPNYNPKEAMPLPDQIDEAINYIKSLETNVKMAQEKKEMLMEEKRTRSGCSRASEAQGSPKSPKIEIHEMGSSLEVILTCGVNNQFIFCEIIRILHEENVEVITANSSMVGDSVLHVVRGEIRQSFFQFGATKVSKRLKRFVNGSISDVEIEPELWNLVIDTSEAWRLLDPTIDNCFPPNPL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0916 219 Gene3D - 3 92 IPR036638 GO:0046983
Ssu8g0916 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Ssu8g0916 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 186 IPR015660 GO:0003700|GO:0006357
Ssu8g0916 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 186 - -
Ssu8g0916 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 81 IPR036638 GO:0046983
Ssu8g0916 219 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g0916 219 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Ssu8g0916 219 Coils Coil 53 80 - -
Ssu8g0916 219 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0916 Ssu-Chr8 15594632 15595897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0916 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.000 7.34e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0916 HLH 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0916 - - gmx:100784042 322.783