Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0915 ATGGCTCATCATCAGCAGGGAGGTCAACCTTCTTCAACCAAAGGGATCGAAAGAAGGATTGTAGAAAAAAACAGGAGAAACCATATGAAGGACCTCTGTTCCAAGCTTAACTCTCTTCTCCCTAACAACAACCCCAGGGGAGAAGCATTATCACGTGCTGATCAAATAGACGAGGCTACCAACTACATCAAGAACCTAGAGACAAAGGTAAAGATGGCgcaggagaagaaagaaagcttAATGCAAAGGAAGAGATCTCGCAGTGACTGTTCGACTACTTCTGAAGCACCAAAAATTGAGATTCGTGAAATGGGTTCCTCGCTACAAATCATTCTGACGTGTGGGTTTGATAACCAGTTCATGTTCAGTGAAGTTATTCGCATACTTCATGAAGAGAACATAGAGGTCAAGAGTGCCCACTCTTCACTCGCTGGAAACTCAATGTTGCATGTTGGGCACGCAGAAATTCAGCAATCCTTTCAGCCAGGAACAACCGCAATGACTGAGAGACTGAAAAGGTTTGTGGACGGACATCGGGAGAACTTTTAA 549 0.4262 MAHHQQGGQPSSTKGIERRIVEKNRRNHMKDLCSKLNSLLPNNNPRGEALSRADQIDEATNYIKNLETKVKMAQEKKESLMQRKRSRSDCSTTSEAPKIEIREMGSSLQIILTCGFDNQFMFSEVIRILHEENIEVKSAHSSLAGNSMLHVGHAEIQQSFQPGTTAMTERLKRFVDGHRENF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0915 182 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 178 - -
Ssu8g0915 182 Pfam Helix-loop-helix DNA-binding domain 18 67 IPR011598 GO:0046983
Ssu8g0915 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 83 IPR036638 GO:0046983
Ssu8g0915 182 Coils Coil 56 83 - -
Ssu8g0915 182 Gene3D - 16 95 IPR036638 GO:0046983
Ssu8g0915 182 SMART finulus 19 72 IPR011598 GO:0046983
Ssu8g0915 182 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 178 IPR015660 GO:0003700|GO:0006357
Ssu8g0915 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0915 Ssu-Chr8 15530088 15530867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0915 4 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.106 2.54e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0915 HLH 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0915 - - vra:106754202 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0915 8 15530088 15530867 Ssu8g0915 8 15530088 15530867 ECH