Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0907 ATGGAGCAGTCTCTGCTGAGAGGCGAAAGCAGTGGCCAGAGGTACCGGCCAAGGGGGATATACCGTCGCTCCGATGCTATCACCTACGGTTCGAACTACGAGAAAGCCGCTGCGCTCGTCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGAGCAAATTCTTGATTCATCAAACTTCCAAAGTTACgcaagatattattttatattcactAAATGCAATCTCATCTGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTAAAAAGCTTAGCACACATTCCTGCAACGATAGGGAGTATTTCTTTTTGGGACAAGTGCCATATATAACTGATGCAGAATGTCTTATTTATGAGGGAATAACTCTTGTTTTGCTAATCATACATAATTTCTTCCCATTGTCATATGAAGGATCCCGTATATATTGGAAAAATCCTATTAATCAGTTGAAGGTTTTTTGTCTAGTAGTTCTTGTTGCTGATATGCTGGTATACGCCTTTTATTTGTCTCCACTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGAGTTGTTCTTTTCGTTCTGAATATTAGGGAGCTACGAGAAACCGTCATTATCTTGGTTGGGATGCTTGACACATACTTAAATGTCTTGGCTTTGGGGCTtctgtttcttctttttgctaGTTGGGTGGCGTATGTGGTTTTTGAGGATACTATACAGGGGAAAACAGTATTCACTTCCTATGGTACTACGTTATATCagatgtttcttttatttaacaCATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCACGTTGGTACTGCCTATTTTTCATACTCTTTGTGCTGGTGGGGGTTTACTTTGTTACAAACTTGATACTTGCTGTTGTTTATGACAGTTTCAAGAGTGAGCTTGTAAAGCAAGTTTTTGAGAAGGATCATATGAGAAGAACTATGTTGGAGAAAGCTTTTGATCTCTTAGATACACATAATGTTGGATATCTCAACAAAGATCAATGCATTAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCCGAGAAGAATTTGAATTGATATTTGATGAGTTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAATTTCAGAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCATTCTACCATTGGCCTAGCTCAAAGAGATTAAAAGCATTTGTGAAGAGTCCTATGTTTGGATACTTAGTGTCCTTCATTCTCATACTAAATTTGGTTGCTGTTATTATTGAGACAACGCttgatatagaaaataattctgCTCAAAAGGTGTGGCAAGGGGTTGAGTTTGTTTTTGGGTGGATATATGTAGTAGAAATGGTTTTAAAGATTTATGCATATGGATTTGAGAACTATTGGCAGGATGGTCAAAATCGCTTTGATTTTATTATCACGGTGATAATTGCCATTGGAGAAACTGTAACATTTGCTGTACCTGATGATGATCTTCCTTTTATCTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGGCTCCTAATGCATGTCAAGCGATACCGAGCCTTTGTGGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGtcttatgtatttattgttCACTTGGTGTACAGATTTTTGGTGGAATCGTTAATGCTGGAAACCCCGAATTGGAATTTACAGCTCTTGCTGAAAATGACtatttggttttcaatttcaatGATTACCCAAATGGAATGGTGacacttttcaattttcttgtcaCGCCAACCTGGGATGCAGTGATGACGAGCTACAAGGAATTAACTGGGACTTCTTGGACCTATTTGTACTTCATTAGCTTCTACTTAATTACTGTTTTGCTGCTTTTGAATTTGATTGTTGCTTTTGTCTTGGAGGCATTCTTTACTGAAATGGATCTTGAATCATCAGAAACCTGTGAAGGAAATGACAAGGAAGTTGAAGGAGATAAATATCGAAGGCGGTCTATTGGCACAAAATCACGAAACCAGAGGGTTGATGTTCTTCTTCATCATATGTTGAGTGCTGAGTTGTGTCAAACGCAGCCTTCCAATACATAA 2208 0.3646 MEQSLLRGESSGQRYRPRGIYRRSDAITYGSNYEKAAALVDLAEDGVGLPEQILDSSNFQSYARYYFIFTKCNLIWSLSYFALIVLNFLEKPLWCKKLSTHSCNDREYFFLGQVPYITDAECLIYEGITLVLLIIHNFFPLSYEGSRIYWKNPINQLKVFCLVVLVADMLVYAFYLSPLAFDFLPFRIAPYIRVVLFVLNIRELRETVIILVGMLDTYLNVLALGLLFLLFASWVAYVVFEDTIQGKTVFTSYGTTLYQMFLLFNTSNNPDVWVPAYKSSRWYCLFFILFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDHMRRTMLEKAFDLLDTHNVGYLNKDQCIRLFEELNKYRTLPKISREEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLAFYHWPSSKRLKAFVKSPMFGYLVSFILILNLVAVIIETTLDIENNSAQKVWQGVEFVFGWIYVVEMVLKIYAYGFENYWQDGQNRFDFIITVIIAIGETVTFAVPDDDLPFISNGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELEFTALAENDYLVFNFNDYPNGMVTLFNFLVTPTWDAVMTSYKELTGTSWTYLYFISFYLITVLLLLNLIVAFVLEAFFTEMDLESSETCEGNDKEVEGDKYRRRSIGTKSRNQRVDVLLHHMLSAELCQTQPSNT 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0907 735 CDD EFh 328 393 IPR002048 GO:0005509
Ssu8g0907 735 Gene3D - 203 310 - -
Ssu8g0907 735 Pfam Ion transport protein 129 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu8g0907 735 Pfam Ion transport protein 431 678 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu8g0907 735 Pfam EF-hand domain pair 329 393 IPR002048 GO:0005509
Ssu8g0907 735 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 732 IPR044581 GO:0005245
Ssu8g0907 735 Gene3D - 311 394 - -
Ssu8g0907 735 SUPERFAMILY Voltage-gated potassium channels 430 677 - -
Ssu8g0907 735 Gene3D - 422 556 IPR027359 -
Ssu8g0907 735 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Ssu8g0907 735 SUPERFAMILY EF-hand 313 397 IPR011992 -
Ssu8g0907 735 Gene3D - 557 716 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0907 1 735 Ion Channels AT4G03560 67.255 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0907 K16900 - gmx:100806160 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0907 8 15355415 15400102 Ssu8g0907 8 15355415 15400102 ECH