Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0902 ATGGCCTTAGACCAGTATTTTGAAGAGGCTATCCCCCAAATAGATTCCTTTGAAGAATCATCTCTTGAAACGTGGAAATGTGCCAGTGATGATATTGCAGATTCTGATAGAAATGCCTCTAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATAGTGTCTCTtctgaaaatgaagagaagcaACAGTGTCCAGTATGCAAATCAGAAATATCACAGTCATCCCTTGTTCCACTATATGGTCGCGGCCAAACCACTTTACCTTCTAAAGGCAAAGGTCGCCAAGTAGGGATTGTCATACCAAGAAGACCCCCTGGTCCTTCTTGGGTGGCTAACTCACCTAGATCACTTGATTCTGCAACTGTTTCCCAACCTACTTCTCATGTTTATCATCACCATTATCATAATCATCCTCAACAATTCAACTCAATTCCAGGCAGTTACACTTCACCAATGTTTAGCACAGGTGGTTCACTCAGAAATGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACTAACATATACACATACCCGAATTCATATGATCTTTCAGGGAACAGTAATCCAAGGATCAGAAGGCATTTAATGCAAGTTGATAGGTCACTCAATAGAATCTGTTTTTTCCTCCTTTGTTGCATAGTTTTGTGTCTTCTCTTATTCTGA 771 0.4021 MALDQYFEEAIPQIDSFEESSLETWKCASDDIADSDRNASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHSVSSENEEKQQCPVCKSEISQSSLVPLYGRGQTTLPSKGKGRQVGIVIPRRPPGPSWVANSPRSLDSATVSQPTSHVYHHHYHNHPQQFNSIPGSYTSPMFSTGGSLRNAFDTTYGVFGEMIYARVFGNQMTNIYTYPNSYDLSGNSNPRIRRHLMQVDRSLNRICFFLLCCIVLCLLLF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0902 256 SUPERFAMILY RING/U-box 41 104 - -
Ssu8g0902 256 SMART ring_2 45 91 IPR001841 -
Ssu8g0902 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 256 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu8g0902 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 256 - -
Ssu8g0902 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 107 IPR013083 -
Ssu8g0902 256 Pfam Zinc finger, C3HC4 type (RING finger) 45 91 IPR018957 GO:0046872
Ssu8g0902 256 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Ssu8g0902 256 ProSiteProfiles Zinc finger RING-type profile. 45 92 IPR001841 -
Ssu8g0902 256 CDD RING-HC_AtRMA_like 43 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0902 Ssu-Chr8 15249976 15250746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0902 38 256 C3H Transcription Factor Family AT4G28270 37.168 1.07e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0902 K10666 - gmx:100785491 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0902 8 15249976 15250746 Ssu8g0902 8 15249976 15250746 ECH
Ssu3g2142 3 70044266 70044967 Ssu8g0902 8 15249976 15250746 PCT