Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0898 ATGCAGCCCCACCGTGTCTCCGCCGTGTTTTTTCTAAGCCTATGCTTTAGAATTGCGCTAGTATACACGCAAGCACAGCCTCACAGTGTTCTGGACCAACATTGGTACCCGGGAACCGCCACGTGGTACGGCGACCCCGAAGGAGACGGTAGCACCGGAGGGGCATGCGGGTATGGTACGTTGGTGGACGTGAAGCCGTTGAAGGCAAGGGTGGGTGCAGTGGGGTCAGTGCTGTTTAAGAAGGGGGAAGGGTGCGGGGCTTGCTATAAGGTGAAGTGTTTGGATCGTAGCGTATGTTCGAAGCGAGCGGTGACGGTTATAATAACGGATGAGTGCCCGGGGTGCCCCTCTGACCGAACGCACTTCGACCTTAGTGGCGCTGCCTTTGGCCGCATGGCGGTTGCGGGTGAAAACGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATTTACCGAAGAACACCGTGCAAGTATGCTGGCCAAAATATTGCCTTCCATGTCAATGAAGGTTCCACACCTTTTTGGCTATCACTTCTGGTGGAGTTTGAAGATGGAGATGGGGACATCGGCTCCATGCATATACAACAAGCGGGGTCCAGTGAGTGGCTGCAGATGAATCATGTATGGGGTGCAAATTGGTGCATTGTTGGGGGGCCTTTAAGAGGACCTTTCTCTGTTAAACTAAGCACATCCACGGGGAAAAGCCTCACTGCCAAAGATGTTATTCCAAGCAATTGGTCTCCAAAAGCCACTTATACCTCTCGCTTAAATTTCCTTTCTTAG 783 0.5262 MQPHRVSAVFFLSLCFRIALVYTQAQPHSVLDQHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPLKARVGAVGSVLFKKGEGCGACYKVKCLDRSVCSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVAGENGQLRNRGEIPVIYRRTPCKYAGQNIAFHVNEGSTPFWLSLLVEFEDGDGDIGSMHIQQAGSSEWLQMNHVWGANWCIVGGPLRGPFSVKLSTSTGKSLTAKDVIPSNWSPKATYTSRLNFLS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0898 260 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Ssu8g0898 260 PRINTS Major pollen allergen Lol pI signature 73 84 IPR005795 GO:0005576|GO:0019953
Ssu8g0898 260 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Ssu8g0898 260 PRINTS Major pollen allergen Lol pI signature 133 148 IPR005795 GO:0005576|GO:0019953
Ssu8g0898 260 PRINTS Major pollen allergen Lol pI signature 230 247 IPR005795 GO:0005576|GO:0019953
Ssu8g0898 260 PRINTS Major pollen allergen Lol pI signature 111 126 IPR005795 GO:0005576|GO:0019953
Ssu8g0898 260 PANTHER EXPANSIN-LIKE PROTEIN B1 9 259 - -
Ssu8g0898 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Ssu8g0898 260 SMART dpbb_1 71 151 IPR007112 -
Ssu8g0898 260 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Ssu8g0898 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Ssu8g0898 260 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Ssu8g0898 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Ssu8g0898 260 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Ssu8g0898 260 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Ssu8g0898 260 Pfam Expansin C-terminal domain 163 243 IPR007117 -
Ssu8g0898 260 Gene3D - 158 259 IPR036749 -
Ssu8g0898 260 Pfam Lytic transglycolase 76 150 IPR009009 -
Ssu8g0898 260 PANTHER EXPANSIN-B3 9 259 - -
Ssu8g0898 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 161 IPR007112 -
Ssu8g0898 260 Gene3D - 19 157 IPR036908 -
Ssu8g0898 260 SUPERFAMILY Barwin-like endoglucanases 27 160 IPR036908 -
Ssu8g0898 260 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0898 Ssu-Chr8 15190944 15194474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0898 9 196 Expansin Gene Family AT4G28250 69.271 7.55e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0898 K20628 - gmx:100780112 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0898 8 15190944 15194474 Ssu8g0898 8 15190944 15194474 ECH
Ssu8g0898 8 15190944 15194474 Ssu3g2149 3 70208673 70211962 PCT