Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0893 ATGGCTGGAGCGAACAGTGGCAAATTCGATGTGGGAGATGAAACTCACAAGGCTTCTCTCCAGAAGGGTAGTGAAAGGCAAGACCGGGAGATTGAAAAGGGAAAGGGCGTGGATTCAAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGCTTCCATCTCACACAGCAGGCCTCTCAAGAAAATCCGCAGCCCCGATCGCCAAGACACAAACCCATCCCCTTCTTCTTCATTTCCTTTTCAACCTTCTCCCCTCCCCACTCCACCTTCATCCTCTTCAAGAATCGTGTTCCCTTTTGCCTTCGACGGTTCCCAATACCCCGTGCAATTCCCTCACCAATTCGGAACCACAAACTCACCTTTCCCTCCGCCACCTTTCCAAaaccagcaacaacaacagATGATTTCATTCGGGTCCCAACAACATCACAACCTCGCCTATCCACCAATCATAGCCCGAGATTCTCCACTtcttcatcaatatcatcatcatcagcagcagcagcagcagcaacagCATCATCAGCATCAGCATCAGCATCAGCAGCATCAGCAACGGCTTCTTCAGTATTGGAGTGACGCGTTGAATCTAAGCCCAAGAGGAATGCTAAGCCGGTTGCGGCCCGATGGAAGGCCATTGTTTAGGCCTCCATCGCAGCCCATAAGCACGACCAAGCTCTACAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTCGCGGAAATCCGTCTACCTCGAAACAGAACGCGTCTCTGGCTAGGCACATTCGACACAGCCGAAGACGCCGCCATGGCCTACGACCGTGAAGCATTCAAGCTAAGAGGAGAAAATGCGAGACTCAATTTCCCCGAACTCTTCCTCAACAAGgacaaaaaagaacaagaagaacTTCCAAAGCAGCATGAACCTGCCCCTGAAGGCAGTGACGTGCCGACAACGCAAGAGTCGAACGAGAATCACTCGGGAATTGGGTCGAGTGATGCCACGGTGAGCGATGAGGCTCACGCTGCTGCTGCTGCGGGTTCTGAAGGAGGGGAAGGAGTTTCGCAGGAATTGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCTGCTTGGGGTCCTGGTAGTCCCGTCTGGGATGATTTGGATCCCACCAATAATCTTCTTTATCAGTCACACGTTCCTTTTTCCAATCCCAATCAACAACAATTCACTGATGCTAGTAGTGATGCTCAGAGACAAGAACATAACACGGGACCAGGTTACTTGTGGAGGAATCagggttga 1281 0.4785 MAGANSGKFDVGDETHKASLQKGSERQDREIEKGKGVDSSSQRRQWKPVFDDASISHSRPLKKIRSPDRQDTNPSPSSSFPFQPSPLPTPPSSSSRIVFPFAFDGSQYPVQFPHQFGTTNSPFPPPPFQNQQQQQMISFGSQQHHNLAYPPIIARDSPLLHQYHHHQQQQQQQQHHQHQHQHQQHQQRLLQYWSDALNLSPRGMLSRLRPDGRPLFRPPSQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKKEQEELPKQHEPAPEGSDVPTTQESNENHSGIGSSDATVSDEAHAAAAAGSEGGEGVSQELVWGEMSAWFNAIPAAWGPGSPVWDDLDPTNNLLYQSHVPFSNPNQQQFTDASSDAQRQEHNTGPGYLWRNQG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0893 426 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 405 - -
Ssu8g0893 426 SMART rav1_2 228 291 IPR001471 GO:0003700|GO:0006355
Ssu8g0893 426 ProSiteProfiles AP2/ERF domain profile. 228 285 IPR001471 GO:0003700|GO:0006355
Ssu8g0893 426 Gene3D AP2/ERF domain 228 286 IPR036955 GO:0003700|GO:0006355
Ssu8g0893 426 MobiDBLite consensus disorder prediction 309 330 - -
Ssu8g0893 426 MobiDBLite consensus disorder prediction 162 187 - -
Ssu8g0893 426 CDD AP2 227 287 IPR001471 GO:0003700|GO:0006355
Ssu8g0893 426 MobiDBLite consensus disorder prediction 10 40 - -
Ssu8g0893 426 PRINTS Ethylene responsive element binding protein signature 229 240 IPR001471 GO:0003700|GO:0006355
Ssu8g0893 426 PRINTS Ethylene responsive element binding protein signature 251 267 IPR001471 GO:0003700|GO:0006355
Ssu8g0893 426 SUPERFAMILY DNA-binding domain 228 286 IPR016177 GO:0003677
Ssu8g0893 426 MobiDBLite consensus disorder prediction 163 177 - -
Ssu8g0893 426 MobiDBLite consensus disorder prediction 394 426 - -
Ssu8g0893 426 MobiDBLite consensus disorder prediction 79 93 - -
Ssu8g0893 426 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 405 - -
Ssu8g0893 426 MobiDBLite consensus disorder prediction 295 350 - -
Ssu8g0893 426 Pfam AP2 domain 229 277 IPR001471 GO:0003700|GO:0006355
Ssu8g0893 426 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0893 Ssu-Chr8 15133323 15134603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0893 30 396 AP2-EREBP Transcription Factor Family AT2G20880 44.205 1.29e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu8g0893 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0893 - - gmx:100809887 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0893 8 15133323 15134603 Ssu8g0893 8 15133323 15134603 ECH