Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0884 ATGGGCTGTTGTGTCTCAACAAGCAGTCAGAGTACTTGTAGTAGCAGGAGCAATGGAGACACAATCGCTCCAACGTGTCTAGAAATCGGAATCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCTGATCATGTTGTCTCTCTGCACCAATTGCCATCCTTACCCAACAGAATCTTCACTAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGGAAGGGTATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCATGGTCCGCACGGTCACCTTGTCGCACGCAAAGTCAGGGAAGCCTTGCCACTCAAACTGCTTTCACTTTTGCATTCCTCCGAATCAGGGAGAAATGGTTCAGGTAAAGCTTGTTTCAGAGGAAACATAAAGCCTGAAAGTGGAGAGTCTGAGAAAGATGTCTCTGCTGAAGAAAAACTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAGAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCAGTATAGTGAAGCAGGGTTCAAATCTGTTCATGGGCAATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGACACCAATGACTCCATGGTGGCGATTCAGTTGACCATTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATTAAACGGTGCAAGGGTAGGGTATTTGCATTACAAGATGAGCCAGAAGTTCATAGGGTGTGGTTGCCTTTTGATGATGCACCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAATATGGTGTGATTTCTATACCTGAATTCTCTCATCGGCAGCTTACAGACAGAGATCAGTTCGTTGTTCTTGCTTCAGATGGGGTCTGGGACGTATTGAGCAATGAAGAGGTGGTTGAGATAGTGTCTTCAGCACCAACTCGATCATCAGCAGCGAGGATTCTGGTGGATTCCGCGGCTCGAGAGTGGAAATTTAAATATCCAACTTCAAAAATGGATGACTGTGCAGTTGTGTGCCTATTTTTGGATGGAAAAATGGATTCAGAATCTGATTGTGATGAGCAGTGCTTCTCTTCTGCAACCATCCAGAGCAACCATTCAGGTAATCCAGCTGAGTCAGATGATGGTCAAAAGTCTGAGCCATCTTTGCAAAGGAACTTTACTGTGAGATCCtcagaagaaaatgaaacctacggaggaggaggaggagtaTCTGTCGATGTTGAAGATGGAACATCAGCGGCTGAAGATCAAAACTGGTTAGGTCTGGAGGGTGTCACCCGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCTGAGGAAAGACCAAGCTCTTGA 1422 0.4381 MGCCVSTSSQSTCSSRSNGDTIAPTCLEIGICGQKSARRTFSDHVVSLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSLLHSSESGRNGSGKACFRGNIKPESGESEKDVSAEEKLNSMWREAFMKAYKAMDRELRSHPNLDCFCSGSTAVSIVKQGSNLFMGNIGDSRAIMGSKDTNDSMVAIQLTIDLKPDLPREAERIKRCKGRVFALQDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRQLTDRDQFVVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKFKYPTSKMDDCAVVCLFLDGKMDSESDCDEQCFSSATIQSNHSGNPAESDDGQKSEPSLQRNFTVRSSEENETYGGGGGVSVDVEDGTSAAEDQNWLGLEGVTRVNSLVQLPRFSEERPSS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0884 473 MobiDBLite consensus disorder prediction 389 423 - -
Ssu8g0884 473 MobiDBLite consensus disorder prediction 137 157 - -
Ssu8g0884 473 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 461 - -
Ssu8g0884 473 SMART PP2C_4 55 368 IPR001932 -
Ssu8g0884 473 CDD PP2Cc 65 370 IPR001932 -
Ssu8g0884 473 PANTHER ALPHABET, ISOFORM E-RELATED 1 461 - -
Ssu8g0884 473 MobiDBLite consensus disorder prediction 389 447 - -
Ssu8g0884 473 SUPERFAMILY PP2C-like 59 372 IPR036457 -
Ssu8g0884 473 Pfam Protein phosphatase 2C 92 347 IPR001932 -
Ssu8g0884 473 Gene3D - 58 378 IPR036457 -
Ssu8g0884 473 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0884 Ssu-Chr8 15003633 15006359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0884 1 473 PP2C-type Phosphatase Gene Family AT1G03590 69.182 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0884 - - gmx:100777448 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0884 8 15003633 15006359 Ssu8g0884 8 15003633 15006359 ECH
Ssu8g0884 8 15003633 15006359 Ssu3g2165 3 70617873 70620758 PCT