Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0877 ATGCTTCAGAACAGAACATCCTTCAGAGCAGCTTTTCCTCATTCATCCCTTCGCCTTTTCTCTTGTTTCCAGCTTTTTCTACAGGAAAGGAGTAAGGTGAAGATTAAGGTTGAGGTTGGAAAAATGGGCGAGGAGAGATCTGGTTCACAGTACAAGAGAGTGAAGATCCATGGAGAAGTTCTATTGGGTTTTATGTTAATCTGCATAGTCCAGTTTTCACTTGCAGCCACTGATCCCACTGATGTTGCTGCAATTAATAACTTATATACTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTTCTAGTGCGGGAGACCCGTGCGGACAAGGGTGGCAAGGCGTTCAATGTAATGGTTCAGTCATACAAGAAATAGTTCTGAATGGTGCAAACTTGGGAGGAGAACTGGGTGATAGCTTGGGAAGTTTTGTTTCTATCAGAGCAATAGTTCTAAACAACAATCACATTGGGGGAAGTATTCCATCCAGTTTGCCAGTCACTTTACAACACTTCTTTCTTTCAGATAATCAGTTCACTGGAAGTATTCCAGCCTCTTTATCCACATTGACTGAGCTGACTGACATGTCACTTAATAACAATTTCTTAACAGGAGAAATACCAGATGTGTTTCAATCTCTTATTCAATTGATCAATCTagatttatctaataataatttgagtGGGGAATTGCCTCCATCTATGGAGAATTTGCCAGCTCTGACCAGCATACATTTACAGAACAATAATCTGTCTGGGACCCTGGATGTTTTACAAGACCTTCCACTTCAAGATTTGAATGTCGAGAACAACCAGTTTGCTGGACCAATACCTCAAAAGTTGTTAAGCATCCCTAACTTCAGAAAAGATGGAAACCTGTTTAATCTTAATGGTAATGCTACTATAGCTCCAGCGCATCCACCTCGTTCTCCGGTGACAGCACCATCATCAGGAACTGTGGTTTCTGGGACACCATCATCTGGACGTATACCTACTAAACCGGCTGAGGGACCAACTGCAGCAAAGGAATCAAATTCTGGGAAATCgaaaaaaaacaccaaaaggGTGGTGTGGATATCTATTTCTGGCGTATTGGTGTTTATTATTGTAGTACTGGGACTTCTTCTCTTTGTTCCAAGATGTAGCAGAAGAGAACGGGTTGACAGAAGTTCCAAGCAACATCCAGTTGGTGCATATGGAGGTGAAAGACAGAATCCTAGGGAATATGGGGATTTAGTCCAACCACCTAATCAAACTGAGAAAGTACCAAAAGGCGCTGTTGTGAGGCCGAAAGGGGATCATCAAGAGGAGACAAGGAGAGTGAGGCCTATTCCAAAGCCACAAGGCGAGAAAGAGAAGGATGAACAAAGAATGGGAACAATCCCAAGGCTGTTAGATCATGAGATAGATATGAGTGCACTAGATGCATATTCAATGCCTTCTCCCccaccacctcctcctccgcctCCGCCTCCTCCACCACTTCCTGCTGAGAGGGTGATTGTTGAACCAACCTCATTCCACAGAGGGGCCAACATCAATCCTCCCAAAAATAGTCCAGTTCCTCCCACTTCTGCGAAAACATTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATTTTATAGGTTTAGGCATGCTGGGGAGTGTGTACAGGGCAGAGCTTCCTGATGGAAAGATACTTGCTGTGAAGAAACTAGACAAGAGAGTTTCTGATCACCAAACAGACGATGAGTTTCTTGAATTGGTAAACAGTATTGACAGAATCCGGCATCCAAATATTGTTGAGCTTATTGGGTACTGTGCAGAGCATGGTCAAAGGCTTCTAATTTATGAGTACTGCAGTAATGGGTCGCTGCAGGATGCACTCCATTCAGATGATGAATTCAAAACGACACTGTCATGGAATGGTCGCATTCGGATAGCACTTGGGGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAGTGTCAGCCACTTGTTGTACACAGAAATTTCAAGTCTGCTAACATTCTCCTTGATGATGTTTCTGTGCGTGTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTCTGTAAGTCAGCTCTCAGGACAACTGCTAACAGCTTATGGCTATGGGGCTCCAGAGTTTGAGTCTGGAATTTACACATACCAGAGTGATATTTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACAGGACGTCAGTCCTACGACAGGAAGCGCCCTCGAGGGGAGCAGTTTCTGGTGAGGTGGGCTATTCCTCAACTTCATGATATTGATGCATTATCAAAGATGGTTGATCCTTCTCTAAATGGAAATTACCCTGCCAAATCATTGTCAAATTTTGCAGACATTATTTCTAGATGTGTTCAGTCGGAGCCAGAATTTAGGCCGGCAATGTCAGAGGTTGTCTTGtacttaataaatatgataaggaAGGAATCTCAGCAAAATGAATCAAATGAACAATGA 2490 0.4185 MLQNRTSFRAAFPHSSLRLFSCFQLFLQERSKVKIKVEVGKMGEERSGSQYKRVKIHGEVLLGFMLICIVQFSLAATDPTDVAAINNLYTALGNPVLPGWVSSAGDPCGQGWQGVQCNGSVIQEIVLNGANLGGELGDSLGSFVSIRAIVLNNNHIGGSIPSSLPVTLQHFFLSDNQFTGSIPASLSTLTELTDMSLNNNFLTGEIPDVFQSLIQLINLDLSNNNLSGELPPSMENLPALTSIHLQNNNLSGTLDVLQDLPLQDLNVENNQFAGPIPQKLLSIPNFRKDGNLFNLNGNATIAPAHPPRSPVTAPSSGTVVSGTPSSGRIPTKPAEGPTAAKESNSGKSKKNTKRVVWISISGVLVFIIVVLGLLLFVPRCSRRERVDRSSKQHPVGAYGGERQNPREYGDLVQPPNQTEKVPKGAVVRPKGDHQEETRRVRPIPKPQGEKEKDEQRMGTIPRLLDHEIDMSALDAYSMPSPPPPPPPPPPPPPLPAERVIVEPTSFHRGANINPPKNSPVPPTSAKTFTIASLQQYTNSFSQDNFIGLGMLGSVYRAELPDGKILAVKKLDKRVSDHQTDDEFLELVNSIDRIRHPNIVELIGYCAEHGQRLLIYEYCSNGSLQDALHSDDEFKTTLSWNGRIRIALGAARALEYLHEQCQPLVVHRNFKSANILLDDVSVRVSDCGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDIYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAIPQLHDIDALSKMVDPSLNGNYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLINMIRKESQQNESNEQ 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0877 829 MobiDBLite consensus disorder prediction 303 352 - -
Ssu8g0877 829 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 65 828 - -
Ssu8g0877 829 SUPERFAMILY Formin homology 2 domain (FH2 domain) 483 493 - -
Ssu8g0877 829 Gene3D Ribonuclease Inhibitor 79 306 IPR032675 -
Ssu8g0877 829 SUPERFAMILY Protein kinase-like (PK-like) 515 813 IPR011009 -
Ssu8g0877 829 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Ssu8g0877 829 MobiDBLite consensus disorder prediction 382 459 - -
Ssu8g0877 829 MobiDBLite consensus disorder prediction 477 497 - -
Ssu8g0877 829 MobiDBLite consensus disorder prediction 311 328 - -
Ssu8g0877 829 Pfam Protein tyrosine and serine/threonine kinase 543 811 IPR001245 GO:0004672|GO:0006468
Ssu8g0877 829 MobiDBLite consensus disorder prediction 425 459 - -
Ssu8g0877 829 Gene3D Transferase(Phosphotransferase) domain 1 618 829 - -
Ssu8g0877 829 Gene3D Phosphorylase Kinase; domain 1 511 617 - -
Ssu8g0877 829 Pfam Leucine rich repeat N-terminal domain 79 118 IPR013210 -
Ssu8g0877 829 ProSiteProfiles Protein kinase domain profile. 540 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0877 829 PANTHER OS01G0253100 PROTEIN 65 828 IPR045271 GO:0004714|GO:0006468
Ssu8g0877 829 MobiDBLite consensus disorder prediction 474 497 - -
Ssu8g0877 829 SUPERFAMILY L domain-like 77 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0877 Ssu-Chr8 14858896 14867015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0877 67 820 Strubbelig Receptor Gene Family AT4G03390 61.140 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu8g0877 PK_Tyr_Ser-Thr 6.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0877 - - gmx:100811490 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0877 8 14858896 14867015 Ssu8g0877 8 14858896 14867015 ECH
Ssu8g0877 8 14858896 14867015 Ssu3g2170 3 70722966 70729292 PCT