Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0875 atgccaTTCCATGGGTATAAATTTCAGCAACTAGGGtttttagttgttgttgttcatTGCGGGATAGAAGAGATAGCAGCGGCTATACTAGCTTCCTCTTTCCCTCTACTAATTTCAGGCATGGATGACGTCATCCTCGATGCTGGGGTTGTTCCAGATCCCACCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATGTTCAGGTTAATGACATTTCTCTGGCCGATTACATTGGAGTGGTAGCATCCAAGCATGCCACATATGTTCCTCACACCGCTGGTAGGTACTCGGTGAAGCGGTTCAGGAAGGCCCAGTGCCCCATAGTTGAGAGACTCACCAACTCTCTCATGATGCATGGTAGAAACAATGGCAAGAAACTCATGGCTGTTAGGATCATCAAGCATGCCATGGAAATTATTCACTTGTTGACTGACCAGAACCCTATTCAGGTTATTGTTGATGCTGTCATCAACAGGTATGGTTTTTGTATTTATGGTTTACGTGTagatgacgatgatgatgacTATGCCTTTTATAGATTAGCGTAG 558 0.4194 MPFHGYKFQQLGFLVVVVHCGIEEIAAAILASSFPLLISGMDDVILDAGVVPDPTQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINRYGFCIYGLRVDDDDDDYAFYRLA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0875 185 Gene3D Ribosomal protein S7 domain 47 163 IPR036823 -
Ssu8g0875 185 Pfam Ribosomal protein S7p/S5e 101 161 IPR023798 -
Ssu8g0875 185 PANTHER RIBOSOMAL PROTEIN S7 46 161 IPR000235 GO:0006412
Ssu8g0875 185 SUPERFAMILY Ribosomal protein S7 60 161 IPR036823 -
Ssu8g0875 185 ProSitePatterns Ribosomal protein S7 signature. 113 139 IPR020606 GO:0003723|GO:0003735|GO:0006412
Ssu8g0875 185 PANTHER 40S RIBOSOMAL PROTEIN S5 46 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0875 Ssu-Chr8 14825336 14826347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0875 58 161 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 87.500 4.49e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0875 K02989 - gmx:100305898 218.009