Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0870 ATGAAGATTGCTTCCTTCTTCGCCAAGGCTTTCCACAGCTTCCCTTCATGCTACAAGCTTGTGCTCCTGTGCACTCTAAgTGGTGGAGGTGTGGTGTCATACTCAGAATCACGACCTGATGCTAAACCTCCTACTCCTAGCATTGATCCTAATGAgcccaagaaaaagaaattggtggTTCTTGGAACAGGATGGGCTGGTACCAGTTTCCTTAAGGATCTTGATGCTTCCTCATATGATGTTCAGGTTGTATCCCCTCGTAACTACTTTGCATTCACTCCTTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCACGAAGCATTGTAGAGCCAATCCGAAACATCATAAAAAAGagaaaaggagaaattaaattttgggaGGCAGAATGCCTGAAGATTGACCCTGGGAACAAAAAGGTTTTATGTCGGTCCAATATTGACAACAACTTAGTGGGAGATGGTGAATTTTCTTTGGATTATGACTTCTTGGTTGTAGCAATAGGAGCACAAGTAAATACATTTGACACCCCTGGTGTCATTGAGAATTGTCATTTTCTGAagGAGGTAGAAGATGCTCAAAAGATCAGACAGACTGTGATAGATTGCTTTGAGAAGGCTGTGCTTCCATCTCTATCTGAAGAGGAACGAAGGACGAATCTACATTTTATAGTCGTTGGAGGGGGTCCAACGGGTGTGGAATTTGCTGCTGAGCTTCATGACTATGTCCAAGAAgatttagtcaaattatacccaTCTGTCAAAGATATAGTGAAGATAACAGTTATTCAATCAGGAGATCACGTCTTGAACACGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAGAAGTTTGGAAGAGATGGCATAGAAGTTCAAACAGGATGTCGAGTTGTCAACGTTAATGACAAGGAAATCACAGTAAAAGTGAAATCAACAGGAGAGTTGTGTTCTGTACCCCATGGATTGGTTGTCTGGTCCACTGGAATTGCAACTCGTTCAGTTGTGAGAGATTTTATGGAACAAATTGGTCAGGGTAAAAGGAATGTCCTAGCAACGAATGAATGGTTGCGAGTGAAGGGATGCGAAGCTGTGTATGCTATTGGTGATTGTTCTTCAATAAATCAACGCAAAATCATGGATGATTGCTTGGCCATTTTTGAAGCTGCAGACAAGGACAAATCAGGCACCTTAACTACTGAAGAATTCAAGGATGTGATAGATGACATTATCTTAAGATATCCGCAAGTGGAAATCTATAAAAAGAGCCAACATTTGTTTGATTGGTCTGCTCTGTGGAAAGATTCCCAAGGAAATGATAGGGAAGAAATAGACATCGAAGGGTTTAAGATGGCCCTTTGTCAAGTGGATTCCAAGATGAAGAGTCTGCCAGCAACTGCACAGGTTGCTGCACAACAGGGTGCATATCTTGCTAGATGCTTTAACTGCAGGGATCAGTGTGCAGAGAATCCTGAAGGTCCTCTAAGATTTGGAAGATCCGGACGCCATAAGTTTCGTCCCTTCAGGTATAAGCATTTTGGGCAATTTGCTCCCCTTGGAGGAGAGCAGGCAGCCGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTATATATGCAAGCAAACAAGTGAGCTGGCGCACAAGGGTGTTAGTAATTTCAGATTGGACAAGAAGATTCGTCTTTGGCAGAGATTCTAGTCGTATCTAA 1734 0.4118 MKIASFFAKAFHSFPSCYKLVLLCTLSGGGVVSYSESRPDAKPPTPSIDPNEPKKKKLVVLGTGWAGTSFLKDLDASSYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKRKGEIKFWEAECLKIDPGNKKVLCRSNIDNNLVGDGEFSLDYDFLVVAIGAQVNTFDTPGVIENCHFLKEVEDAQKIRQTVIDCFEKAVLPSLSEEERRTNLHFIVVGGGPTGVEFAAELHDYVQEDLVKLYPSVKDIVKITVIQSGDHVLNTFDERISSFAEQKFGRDGIEVQTGCRVVNVNDKEITVKVKSTGELCSVPHGLVVWSTGIATRSVVRDFMEQIGQGKRNVLATNEWLRVKGCEAVYAIGDCSSINQRKIMDDCLAIFEAADKDKSGTLTTEEFKDVIDDIILRYPQVEIYKKSQHLFDWSALWKDSQGNDREEIDIEGFKMALCQVDSKMKSLPATAQVAAQQGAYLARCFNCRDQCAENPEGPLRFGRSGRHKFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSIYASKQVSWRTRVLVISDWTRRFVFGRDSSRI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0870 577 Gene3D - 434 576 - -
Ssu8g0870 577 Gene3D - 45 397 - -
Ssu8g0870 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Ssu8g0870 577 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 52 577 - -
Ssu8g0870 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Ssu8g0870 577 SUPERFAMILY EF-hand 333 463 IPR011992 -
Ssu8g0870 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 378 IPR023753 GO:0016491
Ssu8g0870 577 SUPERFAMILY FAD/NAD(P)-binding domain 220 375 IPR036188 -
Ssu8g0870 577 SMART efh_1 382 410 IPR002048 GO:0005509
Ssu8g0870 577 SUPERFAMILY FAD/NAD(P)-binding domain 55 274 IPR036188 -
Ssu8g0870 577 PANTHER NADH DEHYDROGENASE 52 577 IPR045024 GO:0003954|GO:0006116
Ssu8g0870 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Ssu8g0870 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Ssu8g0870 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0870 Ssu-Chr8 14755439 14760461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0870 7 577 Chloroplast and Mitochondria Gene Families AT4G21490 64.000 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0870 K03885 - gmx:100793566 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0870 8 14755439 14760461 Ssu8g0870 8 14755439 14760461 ECH